SecReT4
T4SS ID244
StrainAgrobacterium tumefaciens plasmid pTi-SAKURA (NC_002147)
Repliconplasmid pTi-SAKURA [Browse all T4SS(s) in this replicon]
AccessionNC_002147
Location7308..16975; 97732..104552
NameTrb
FunctionNA
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111111
ComponentTrbKTrbLTrbNTraFTraG
Number11011

The information of T4SS components from NC_002147
Region 1: 7308..16975
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pTi-SAKURA_p003 (tiorf2)2594..3319 [-], 72610954822hypothetical protein 
2pTi-SAKURA_p004 (tiorf3)3321..4031 [-], 71110954823hypothetical protein 
3pTi-SAKURA_p005 (tiorf4)4106..4957 [-], 85210954824hypothetical protein 
4pTi-SAKURA_p006 (tiorf5)5022..5795 [-], 77410954825hypothetical protein 
5pTi-SAKURA_p007 (tiorf6)6016..6951 [+], 93610954826hypothetical protein 
6pTi-SAKURA_p008 (tiorf7)7308..8624 [-], 131710954827conjugal transfer protein TrbI  TrbI
7pTi-SAKURA_p009 (tiorf8)8637..9113 [-], 47710954828conjugal transfer protein TrbH  TrbH
8pTi-SAKURA_p010 (tiorf9)9113..9967 [-], 85510954829conjugal transfer protein TrbG  TrbG
9pTi-SAKURA_p011 (tiorf10)9985..10647 [-], 66310954830conjugal transfer protein TrbF  TrbF
10pTi-SAKURA_p012 (tiorf11)10662..11825 [-], 116410954831conjugal transfer protein TrbL  TrbL
11pTi-SAKURA_p013 (tiorf12)11852..12070 [-], 21910954832hypothetical protein  TrbK
12pTi-SAKURA_p014 (tiorf13)12067..12870 [-], 80410954833conjugal transfer protein TrbJ  TrbJ
13pTi-SAKURA_p015 (tiorf14)12842..15310 [-], 246910954834conjugal transfer protein TrbE  TrbE
14pTi-SAKURA_p016 (tiorf15)15321..15620 [-], 30010954835conjugal transfer protein TrbD  TrbD
15pTi-SAKURA_p017 (tiorf16)15613..16014 [-], 40210954836conjugal transfer protein TrbC  TrbC
16pTi-SAKURA_p018 (tiorf17)16004..16975 [-], 97210954837conjugal transfer protein TrbB  TrbB
17pTi-SAKURA_p019 (tiorf18)16972..17607 [-], 63610954838putative autoinducer synthesis protein 
18pTi-SAKURA_p020 (tiorf19)17971..19188 [+], 121810954839plasmid-partitioning protein RepA 
19pTi-SAKURA_p021 (tiorf20)19418..20428 [+], 101110954840plasmid partitioning protein RepB 
20pTi-SAKURA_p023 (tiorf21)20643..21962 [+], 132010954841replication initiation protein RepC 
 
Region 2: 97732..104552
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pTi-SAKURA_p102 (tiorf100)93812..94450 [+], 63910954920hypothetical protein 
2pTi-SAKURA_p103 (tiorf101)94584..95198 [-], 61510954921hypothetical protein 
3pTi-SAKURA_p104 (tiorf102)95500..95778 [-], 27910954922hypothetical protein 
4pTi-SAKURA_p105 (tiorf103)95918..96175 [-], 25810954923hypothetical protein 
5pTi-SAKURA_p106 (tiorf104)96606..96932 [+], 32710954924hypothetical protein 
6pTi-SAKURA_p107 (tiorf105)97310..97711 [-], 40210954925hypothetical protein 
7pTi-SAKURA_p108 (tiorf106)97732..99681 [-], 195010954926conjugal transfer coupling protein TraG  TraG
8pTi-SAKURA_p109 (tiorf107)99668..99883 [-], 21610954927conjugal transfer protein TraD 
9pTi-SAKURA_p110 (tiorf108)99888..100184 [-], 29710954928conjugal transfer protein TraC 
10pTi-SAKURA_p111 (tiorf109)100441..104025 [+], 358510954929hypothetical protein 
11pTi-SAKURA_p112 (tiorf110)104022..104552 [+], 53110954930conjugal transfer pilin processing protease TraF  TraF
12pTi-SAKURA_p113 (tiorf111)104476..105723 [+], 124810954931conjugal transfer protein TraB 
13pTi-SAKURA_p114 (tiorf112)105737..106363 [+], 62710954932conjugal transfer protein TraH 
14pTi-SAKURA_p115 (tiorf113)106888..107196 [+], 30910954933hypothetical protein 
15pTi-SAKURA_p116 (tiorf114)107355..109079 [-], 172510954934hypothetical protein 
16pTi-SAKURA_p117 (tiorf115)109182..109511 [-], 33010954935hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Suzuki K; Hattori Y; Uraji M; Ohta N; Iwata K; Murata K; Kato A; Yoshida K (2000). Complete nucleotide sequence of a plant tumor-inducing Ti plasmid. Gene. 242(1-2):331-6. [PudMed:10721727]
(2) Suzuki K; Hattori Y; Uraji M; Ohta N; Katoh A; Yoshida K (1997). Genome structure of pTi-SAKURA (II): genetic map constructed by complete DNA sequencing. Nucleic Acids Symp Ser. (37):161-2. [PudMed:9586049]
(3) Suzuki K; Ohta N; Hattori Y; Uraji M; Kato A; Yoshida K (1998). Novel structural difference between nopaline- and octopine-type trbJ genes: construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA. Biochim Biophys Acta. 1396(1):1-7. [PudMed:9524202]