SecReT4
T4SS ID248
StrainAzorhizobium caulinodans ORS 571
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009937
Location4378667..4383872; 4410399..4419527
NameTrb
FunctionNA
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111010
ComponentTrbKTrbLTrbNTraFTraG
Number01111

The information of T4SS components from NC_009937
Region 1: 4378667..4383872
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1AZC_38214374264..4374869 [-], 606158425445transposase 
2AZC_38224374900..4375049 [-], 150158425446transposase 
3AZC_3823 (mauG)4375318..4376538 [+], 1221158425447methylamine utilization protein 
4AZC_38244376790..4377257 [+], 468158425448transposase 
5AZC_38254377257..4377583 [+], 327158425449transposase 
6AZC_38264378215..4378661 [-], 447158425450hypothetical protein 
7AZC_38274378667..4380658 [-], 1992158425451conjugal transfer coupling protein TraG  TraG
8AZC_38284380680..4382554 [-], 1875158425452hypothetical protein 
9AZC_38294382663..4383325 [-], 663158425453lytic transglycosylase  TrbN
10AZC_38304383327..4383872 [-], 546158425454conjugal transfer protein  TraF
11AZC_38314383869..4384390 [-], 522158425455hypothetical protein 
12AZC_38324384387..4384638 [-], 252158425456hypothetical protein 
13AZC_38334384635..4385288 [-], 654158425457partition protein 
14AZC_38344385285..4386394 [-], 1110158425458replication protein A 
15AZC_38354386403..4386684 [-], 282158425459hypothetical protein 
16AZC_38364386980..4387306 [-], 327158425460hypothetical protein 
17AZC_38374387937..4388377 [-], 441158425461hypothetical protein 
18AZC_38384388506..4388838 [-], 333158425462hypothetical protein 
 
Region 2: 4410399..4419527
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1AZC_38524405832..4406458 [+], 627158425476transposase 
2AZC_38534406514..4406936 [+], 423158425477transposase 
3AZC_3854 (lysR)4407002..4407319 [+], 318158425478transcriptional regulator 
4AZC_38554407343..4407582 [+], 240158425479transposase and inactivated derivative 
5AZC_38564408013..4409116 [-], 1104158425480hypothetical protein 
6AZC_38574409324..4410223 [+], 900158425481hypothetical protein 
7AZC_3858 (trbB)4410399..4411370 [+], 972158425482conjugal transfer protein  TrbB
8AZC_3859 (trbC)4411367..4411699 [+], 333158425483conjugal transfer protein  TrbC
9AZC_3860 (trbD)4411699..4411968 [+], 270158425484conjugal transfer protein  TrbD
10AZC_3861 (trbE)4411982..4414420 [+], 2439158425485conjugal transfer ATPase TrbE  TrbE
11AZC_3862 (trbJ)4414417..4415169 [+], 753158425486conjugal transfer protein TrbJ 
12AZC_38634415181..4415450 [+], 270158425487hypothetical protein 
13AZC_3864 (trbL)4415454..4416683 [+], 1230158425488conjugal transfer protein TrbL  TrbL
14AZC_3865 (trbF)4416680..4417369 [+], 690158425489conjugal transfer protein TrbF  TrbF
15AZC_3866 (trbG)4417372..4418349 [+], 978158425490conjugal transfer protein  TrbG
16AZC_3867 (trbI)4418346..4419527 [+], 1182158425491hypothetical protein  TrbI
17AZC_38684419530..4419808 [+], 279158425492hypothetical protein 
18AZC_38694420111..4421007 [-], 897158425493transcriptional regulator 
19AZC_38704421097..4422035 [+], 939158425494amino acid ABC transporter substrate-binding protein 
20AZC_38714422032..4422715 [+], 684158425495amino acid ABC transporter permease/substrate-binding protein 
21AZC_38724422717..4423424 [+], 708158425496amino acid ABC transporter permease 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Lee KB; De Backer P; Aono T; Liu CT; Suzuki S; Suzuki T; Kaneko T; Yamada M; Tabata S; Kupfer DM; Najar FZ; Wiley GB; Roe B; Binnewies TT; Ussery DW; D'Haeze W; Herder JD; Gevers D; Vereecke D; Holsters M; Oyaizu H (2008). The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics. 9:271. [PudMed:18522759] in_silico
 
in_silico This literature contains bioinformatics investigation