SecReT4
T4SS ID252
StrainAgrobacterium vitis S4
Repliconplasmid pTiS4 [Browse all T4SS(s) in this replicon]
AccessionNC_011982
Location84307..90859; 248211..257874
NameTrb
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111111
ComponentTrbKTrbLTrbNTraFTraG
Number11011

The information of T4SS components from NC_011982
Region 1: 84307..90859
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Avi_8115 (xerC)79742..80680 [+], 939222080176site-specific tyrosine recombinase XerC 
2Avi_811680677..81684 [+], 1008222080177integrase/recombinase 
3Avi_811982014..82316 [+], 303222080178hypothetical protein 
4Avi_812082457..82654 [+], 198222080179hypothetical protein 
5Avi_812182794..83042 [+], 249222080180hypothetical protein 
6Avi_812383145..83423 [-], 279222080181HNS-type DNA binding protein 
7Avi_812683507..83815 [-], 309222080182hypothetical protein 
8Avi_8127 (yci)83870..84310 [-], 441222080183nuclease 
9Avi_8128 (traG)84307..86271 [-], 1965222080184conjugal transfer coupling protein TraG  TraG
10Avi_8129 (traD)86258..86473 [-], 216222080185conjugal transfer protein Dtr system 
11Avi_8130 (traC)86478..86774 [-], 297222080186conjugal transfer protein TraC 
12Avi_8131 (traA)87030..90332 [+], 3303222080187Dtr system oriT relaxase 
13Avi_8132 (traF)90329..90859 [+], 531222080188conjugal transfer pilin processing protease TraF  TraF
14Avi_8135 (traH)92094..92723 [+], 630222080189conjugal transfer protein TraH 
15Avi_813692879..93325 [+], 447222080190hypothetical protein 
16Avi_813793351..93785 [+], 435222080191hypothetical protein 
17Avi_8138 (traM)94123..94431 [+], 309222080192transcriptional repressor 
18Avi_8140 (traR)94839..95522 [-], 684222080193transcriptional regulator TraR 
 
Region 2: 248211..257874
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Avi_8320 (hyuA)243894..245924 [-], 2031222080307hydantoin utilization protein 
2Avi_8321 (noxB)246018..247160 [-], 1143222080308D-nopaline dehydrogenase 
3Avi_8322 (nocR)247266..248156 [+], 891222080309LysR family transcriptional regulator 
4Avi_8323 (trbI)248211..249524 [-], 1314222080310conjugal transfer protein TrbI  TrbI
5Avi_8324 (trbH)249537..250013 [-], 477222080311conjugal transfer protein TrbH  TrbH
6Avi_8325 (trbG)250013..250867 [-], 855222080312conjugal transfer protein TrbG  TrbG
7Avi_8326 (trbF)250884..251546 [-], 663222080313conjugal transfer protein TrbF  TrbF
8Avi_8328 (trbL)251561..252589 [-], 1029222080314conjugal transfer protein TrbL  TrbL
9Avi_8329 (trbK)252739..252966 [-], 228222080315entry-exclusion protein  TrbK
10Avi_8330 (trbJ)252963..253772 [-], 810222080316conjugal transfer protein TrbJ  TrbJ
11Avi_8331 (trbE)253744..256206 [-], 2463222080317conjugal transfer protein TrbE  TrbE
12Avi_8332 (trbD)256217..256516 [-], 300222080318conjugal transfer protein TrbD  TrbD
13Avi_8333 (trbC)256509..256913 [-], 405222080319conjugal transfer protein TrbC  TrbC
14Avi_8334 (trbB)256903..257874 [-], 972222080320conjugal transfer protein TrbB  TrbB
15Avi_8335 (traI)257871..258509 [-], 639222080321putative autoinducer synthesis protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_011982