SecReT4
T4SS ID288
StrainNovosphingobium sp. PP1Y
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_015580
Location271480..292488
NameTrb
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number110111011
ComponentTrbKTrbLTrbNTraFTraG
Number01011

The information of T4SS components from NC_015580
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1PP1Y_AT2460266591..267070 [+], 480334139836hypothetical protein 
2PP1Y_AT2475267450..267767 [+], 318334139837hypothetical protein 
3PP1Y_AT2480267861..268079 [+], 219334139838hypothetical protein 
4PP1Y_AT2487268306..268569 [+], 264334139839hypothetical protein 
5PP1Y_AT2497269023..269478 [+], 456334139840hypothetical protein 
6PP1Y_AT2507269848..270714 [+], 867334139841plasmid replication initiator-like protein 
7PP1Y_AT2522270962..271483 [+], 522334139842hypothetical protein 
8PP1Y_AT2527271480..272073 [+], 594334139843conjugal transfer protein TraF  TraF
9PP1Y_AT2535272070..272402 [+], 333334139844hypothetical protein 
10PP1Y_AT2552273415..275169 [+], 1755334139845hypothetical protein 
11PP1Y_AT2572275204..277264 [+], 2061334139846type IV secretion system protein VirD4  TraG
12PP1Y_AT2598277261..277689 [+], 429334139847hypothetical protein 
13PP1Y_AT2603277753..278247 [-], 495334139848BadM/Rrf2 family transcriptional regulator 
14PP1Y_AT2610278330..278785 [+], 456334139849hypothetical protein 
15PP1Y_AT2615278785..279075 [+], 291334139850hypothetical protein 
16PP1Y_AT2621279068..279532 [+], 465334139851hypothetical protein 
17PP1Y_AT2626279665..280213 [+], 549334139852nitric oxide dioxygenase 
18PP1Y_AT2635280245..281369 [+], 1125334139853HPP family protein 
19PP1Y_AT2647281444..282316 [-], 873334139854hypothetical protein 
20PP1Y_AT2664282309..282995 [-], 687334139855hypothetical protein 
21PP1Y_AT2673283264..284247 [+], 984334139856type IV secretion system protein VirB11  TrbB
22PP1Y_AT2685284244..284576 [+], 333334139857type IV secretion system protein VirB2  TrbC
23PP1Y_AT2691284842..287298 [+], 2457334139858type IV secretion system protein VirB4  TrbE
24PP1Y_AT2717287295..288014 [+], 720334139859conjugal transfer protein TrbJ  TrbJ
25PP1Y_AT2728288267..289547 [+], 1281334139860type IV secretion system protein TrbL  TrbL
26PP1Y_AT2739289569..290252 [+], 684334139861type IV secretion system protein VirB5  TrbF
27PP1Y_AT2745290327..291166 [+], 840334139862type IV secretion system protein VirB9  TrbG
28PP1Y_AT2755291163..292488 [+], 1326334139863type IV secretion system protein VirB10  TrbI
29PP1Y_AT2769292485..292712 [+], 228334139864hypothetical protein 
30PP1Y_AT2772292700..293596 [-], 897334139865LysR family transcriptional regulator 
31PP1Y_AT2782293803..294567 [+], 765334139866hypothetical protein 
32PP1Y_AT2792294573..294716 [-], 144334139867hypothetical protein 
33PP1Y_AT2793294711..294878 [+], 168334139868prevent-host-death protein 
34PP1Y_AT2797294871..296733 [+], 1863334139869putative type I restriction enzyme 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_015580