SecReT4
T4SS ID296
StrainAzotobacter vinelandii DJ
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_012560
Location3636078..3646864
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111001
ComponentTrbKTrbLTrbNTraFTraG
Number01001

The information of T4SS components from NC_012560
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Avin_355603631223..3631330 [+], 108226945607hypothetical protein 
2Avin_355703631382..3631699 [+], 318226945608hypothetical protein 
3Avin_355803631903..3632400 [-], 498226945609hypothetical protein 
4Avin_355903632844..3633860 [-], 1017226945610transposase IS116/IS110/IS902 
5Avin_356003633976..3634293 [+], 318226945611transposase 
6Avin_356203634554..3634799 [-], 246226945612hypothetical protein 
7Avin_35640 (trbG)3636078..3636974 [-], 897226945613P-type conjugative transfer protein TrbG  TrbG
8Avin_35650 (trbF)3637076..3637780 [-], 705226945614conjugal transfer protein TrbF  TrbF
9Avin_35660 (trbL)3637811..3639184 [-], 1374226945615conjugal transfer protein TrbL  TrbL
10Avin_356703639181..3639483 [-], 303226945616lipoprotein 
11Avin_35680 (trbJ)3639496..3640233 [-], 738226945617conjugal transfer protein TrbJ  TrbJ
12Avin_35690 (trbE)3640230..3642680 [-], 2451226945618conjugal transfer ATPase TrbE  TrbE
13Avin_35700 (trbD)3642693..3642977 [-], 285226945619P-type conjugative transfer protein TrbD  TrbD
14Avin_35710 (trbC)3642974..3643258 [-], 285226945620P-type conjugative transfer protein TrbC  TrbC
15Avin_35720 (trbB)3643354..3644406 [-], 1053226945621P-type conjugative transfer ATPase TrbB  TrbB
16Avin_357303644403..3644867 [-], 465226945622hypothetical protein 
17Avin_357403644864..3646864 [-], 2001226945623conjugal transfer coupling protein TraG  TraG
18Avin_357503647100..3647366 [-], 267226945624lipoprotein 
19Avin_357603647363..3648307 [-], 945226945625LysR family transcriptional regulator 
20Avin_357703648318..3649796 [-], 1479226945626major Facilitator Superfamily transporter 
21Avin_357803649892..3650509 [+], 618226945627TetR family transcriptional regulator 
22Avin_357903650610..3651641 [-], 1032226945628hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEAviDJ-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation