SecReT4
T4SS ID300
StrainRalstonia solanacearum GMI1000
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_003295
Location2781912..2807465
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111011
ComponentTrbKTrbLTrbNTraFTraG
Number01011

The information of T4SS components from NC_003295
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RSc2569 (alkA)2777509..2778147 [+], 63917547288DNA-3-methyladenine glycosylase 
2RSc2570 (ada)2778230..2779312 [+], 108317547289bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator 
3RSc25712779312..2779581 [+], 27017547290hypothetical protein 
4RSc25722779621..2780043 [+], 42317547291lipoprotein 
5RSc2573 (tISRso15)2780153..2781373 [+], 122117547292ISRSO15-transposase 
6RSc25742781673..2781915 [-], 24317547293hypothetical protein 
7RSc2575 (trbI)2781912..2783189 [-], 127817547294conjugal transfer TrbI transmembrane protein  TrbI
8RSc2576 (trbG)2783192..2784196 [-], 100517547295conjugal transfer lipoprotein TrbG  TrbG
9RSc2577 (trbF)2784193..2784897 [-], 70517547296conjugal transfer protein TrbF  TrbF
10RSc2578 (trbL)2784928..2786301 [-], 137417547297conjugal transfer protein TrbL  TrbL
11RSc25792786298..2786624 [-], 32717547298lipoprotein 
12RSc2580 (trbJ)2786637..2787374 [-], 73817547299conjugal transfer protein TrbJ  TrbJ
13RSc2581 (trbE)2787371..2789821 [-], 245117547300conjugal transfer ATPase TrbE  TrbE
14RSc2582 (trbD)2789834..2790106 [-], 27317547301conjugal transfer TrbD transmembrane protein  TrbD
15RSc2583 (trbC)2790103..2790495 [-], 39317547302conjugal transfer TrbC transmembrane protein  TrbC
16RSc2584 (trbB)2790492..2791559 [-], 106817547303conjugal transfer protein TrbB  TrbB
17RSc25852791556..2792032 [-], 47717547304hypothetical protein 
18RSc2586 (traG)2792029..2794056 [-], 202817547305conjugal transfer protein TraG  TraG
19RSc25872794292..2794555 [-], 26417547306lipoprotein 
20RSc25882794552..2795496 [-], 94517547307transcription regulator protein 
21RSc25892795654..2796046 [-], 39317547308hypothetical protein 
22RSc25902796232..2796618 [-], 38717547309hypothetical protein 
23RSc25912796769..2797659 [+], 89117547310transcriptional regulator transcription regulator protein 
24RSc25922797761..2798117 [+], 35717547311hypothetical protein 
25RSc25932798145..2799572 [-], 142817547312carboxylesterase 
26RSc25942799637..2800311 [-], 67517547313glutathione-S-transferase 
27RSc25952800406..2800735 [-], 33017547314hypothetical protein 
28RSc25962800779..2801369 [-], 59117547315hypothetical protein 
29RSc25972801443..2802201 [-], 75917547316dehydrogenase/reductase oxidoreductase 
30RSc25982802374..2803273 [+], 90017547317transcription regulator protein 
31RSc25992803326..2804081 [-], 75617547318hypothetical protein 
32RSc26002804006..2804443 [+], 43817547319hypothetical protein 
33RSc26012804432..2806483 [-], 205217547320hypothetical protein 
34RSc2602 (traF)2806866..2807465 [-], 60017547321conjugal transfer TraF transmembrane protein  TraF
35RSc26032807462..2808007 [-], 54617547322hypothetical protein 
36RSc26042808004..2808288 [-], 28517547323hypothetical protein 
37RSc2605 (parA3)2808276..2808914 [-], 63917547324partition protein 
38RSc26062809180..2810025 [-], 84617547325replication initiator and transcription repressor protein 
39RSc26072810052..2810327 [-], 27617547326hypothetical protein 
40RSc26082810442..2811212 [-], 77117547327hypothetical protein 
41RSc26092811557..2812150 [-], 59417547328lipoprotein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICERsoGMI1000-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation