SecReT4
T4SS ID304
StrainShewanella sp. ANA-3
Repliconchromosome 1 [Browse all T4SS(s) in this replicon]
AccessionNC_008577
Location1480079..1503157
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111011
ComponentTrbKTrbLTrbNTraFTraG
Number01011

The information of T4SS components from NC_008577
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Shewana3_12581475102..1475392 [-], 291117919707XRE family transcriptional regulator 
2Shewana3_12591475678..1476007 [+], 330117919708putative lipoprotein 
3Shewana3_12611476330..1477127 [+], 798117919709hypothetical protein 
4Shewana3_12621477211..1477495 [+], 285117919710hypothetical protein 
5Shewana3_12631477522..1478379 [+], 858117919711putative replication initiator and transcription repressor protein 
6Shewana3_12641478666..1479304 [+], 639117919712cobyrinic acid a,c-diamide synthase 
7Shewana3_12651479301..1479552 [+], 252117919713hypothetical protein 
8Shewana3_12661479549..1480082 [+], 534117919714hypothetical protein 
9Shewana3_12671480079..1480666 [+], 588117919715TraF peptidase  TraF
10Shewana3_12681481079..1483052 [+], 1974117919716hypothetical protein 
11Shewana3_12691483049..1483843 [-], 795117919717XRE family transcriptional regulator 
12Shewana3_12701483912..1485396 [+], 1485117919718major facilitator superfamily transporter 
13Shewana3_12711485411..1485686 [+], 276117919719LysR family transcriptional regulator 
14Shewana3_12721485693..1485914 [+], 222117919720hypothetical protein 
15Shewana3_12731485995..1486189 [+], 195117919721Smp-30/Cgr1 family protein 
16Shewana3_12741486226..1486606 [+], 381117919722Smp-30/Cgr1 family protein 
17Shewana3_12751486964..1487641 [+], 678117919723IclR family transcriptional regulator 
18Shewana3_12761487726..1488133 [+], 408117919724hypothetical protein 
19Shewana3_12771488130..1489353 [+], 1224117919725major facilitator superfamily transporter 
20Shewana3_12781489643..1490584 [+], 942117919726LysR family transcriptional regulator 
21Shewana3_12791490581..1490844 [+], 264117919727putative lipoprotein 
22Shewana3_12801491078..1493075 [+], 1998117919728conjugal transfer coupling protein TraG  TraG
23Shewana3_12811493072..1493536 [+], 465117919729CopG/DNA-binding domain-containing protein 
24Shewana3_12821493533..1494603 [+], 1071117919730type II secretion system protein E  TrbB
25Shewana3_12831494600..1494986 [+], 387117919731conjugal transfer protein TrbC  TrbC
26Shewana3_12841494983..1495252 [+], 270117919732putative conjugal transfer trbD transmembrane protein  TrbD
27Shewana3_12851495263..1497713 [+], 2451117919733conjugal transfer ATPase TrbE  TrbE
28Shewana3_12861497710..1498453 [+], 744117919734conjugal transfer protein TrbJ  TrbJ
29Shewana3_12871498466..1498783 [+], 318117919735putative lipoprotein 
30Shewana3_12881498780..1500162 [+], 1383117919736conjugal transfer protein TrbL  TrbL
31Shewana3_12891500181..1500885 [+], 705117919737conjugal transfer protein TrbF  TrbF
32Shewana3_12901500882..1501874 [+], 993117919738conjugal transfer protein TrbG/VirB9/CagX  TrbG
33Shewana3_12911501877..1503157 [+], 1281117919739conjugation TrbI family protein  TrbI
34Shewana3_12921503154..1503399 [+], 246117919740hypothetical protein 
35Shewana3_12931504135..1506138 [-], 2004117919741methyl-accepting chemotaxis sensory transducer 
36Shewana3_12941506398..1506643 [+], 246117919742hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6034 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] in_silico
 
in_silico This literature contains bioinformatics investigation