SecReT4
T4SS ID313
StrainAlicycliphilus denitrificans K601
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_015422
Location1657600..1685001
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111011
ComponentTrbKTrbLTrbNTraFTraG
Number01011

The information of T4SS components from NC_015422
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Alide2_15561653251..1654213 [-], 963330824163transposase IS4 family protein 
2Alide2_15571654411..1655379 [-], 969330824164transposase IS4 family protein 
3Alide2_15591655594..1655929 [+], 336330824165hypothetical protein 
4Alide2_15601655898..1656842 [-], 945330824166integrase catalytic subunit 
5Alide2_15621657385..1657603 [-], 219330824167hypothetical protein 
6Alide2_15631657600..1658886 [-], 1287330824168conjugation TrbI family protein  TrbI
7Alide2_15641658889..1659872 [-], 984330824169P-type conjugative transfer protein TrbG  TrbG
8Alide2_15651659869..1660573 [-], 705330824170conjugal transfer protein TrbF  TrbF
9Alide2_15661660586..1661971 [-], 1386330824171P-type conjugative transfer protein TrbL  TrbL
10Alide2_15671661968..1662288 [-], 321330824172hypothetical protein 
11Alide2_15681662301..1663026 [-], 726330824173P-type conjugative transfer protein TrbJ  TrbJ
12Alide2_15691663023..1665476 [-], 2454330824174type IV transporter system protein VirB  TrbE
13Alide2_15701665492..1665764 [-], 273330824175conjugal transfer protein  TrbD
14Alide2_15711665761..1666144 [-], 384330824176conjugal transfer protein Trbc  TrbC
15Alide2_15721666141..1667193 [-], 1053330824177P-type conjugative transfer ATPase TrbB  TrbB
16Alide2_15731667190..1667654 [-], 465330824178CopG family transcriptional regulator 
17Alide2_15741667651..1669651 [-], 2001330824179TRAG family protein  TraG
18Alide2_15751669887..1670165 [-], 279330824180hypothetical protein 
19Alide2_15761670162..1671106 [-], 945330824181LysR family transcriptional regulator 
20Alide2_15771671209..1672462 [-], 1254330824182monooxygenase FAD-binding protein 
21Alide2_15781672473..1673990 [-], 1518330824183NodT family RND efflux system outer membrane lipoprotein 
22Alide2_15791674003..1675118 [-], 1116330824184ABC transporter 
23Alide2_15801675124..1676266 [-], 1143330824185ABC transporter 
24Alide2_15811676263..1678041 [-], 1779330824186sulfate-transporting ATPase, polyamine-transporting ATPase 
25Alide2_15821678038..1679036 [-], 999330824187secretion protein HlyD family protein 
26Alide2_15831679163..1679855 [+], 693330824188TetR family transcriptional regulator 
27Alide2_15841679860..1681881 [+], 2022330824189hypothetical protein 
28Alide2_15851681968..1683965 [-], 1998330824190hypothetical protein 
29Alide2_15861683962..1684417 [-], 456330824191hypothetical protein 
30Alide2_15871684414..1685001 [-], 588330824192peptidase S26  TraF
31Alide2_15881684998..1685543 [-], 546330824193hypothetical protein 
32Alide2_15891685540..1685824 [-], 285330824194hypothetical protein 
33Alide2_15901685821..1686459 [-], 639330824195Cobyrinic acid ac-diamide synthase 
34Alide2_15911686713..1687570 [-], 858330824196replication initiator protein A 
35Alide2_15921687597..1687878 [-], 282330824197hypothetical protein 
36Alide2_15931687963..1688736 [-], 774330824198hypothetical protein 
37Alide2_15941689046..1689549 [-], 504330824199hypothetical protein 
38Alide2_15951689637..1689942 [+], 306330824200helix-turn-helix domain-containing protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEAdeK601-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation