SecReT4
T4SS ID323
StrainPolaromonas naphthalenivorans CJ2
Repliconplasmid pPNAP01 [Browse all T4SS(s) in this replicon]
AccessionNC_008757
Location69719..81445
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111011
ComponentTrbKTrbLTrbNTraFTraG
Number01001

The information of T4SS components from NC_008757
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Pnap_418865158..66897 [+], 1740121582772aldehyde dehydrogenase 
2Pnap_418966988..67698 [+], 711121582773OmpW family protein 
3Pnap_419168268..69179 [+], 912121582774LysR family transcriptional regulator 
4Pnap_419269191..69433 [+], 243121582775hypothetical protein 
5Pnap_419369719..71710 [+], 1992121582776conjugal transfer coupling protein TraG  TraG
6Pnap_419471707..72159 [+], 453121582777CopG/DNA-binding domain-containing protein 
7Pnap_419572156..73187 [+], 1032121582778type II secretion system protein E  TrbB
8Pnap_419673184..73543 [+], 360121582779conjugal transfer protein TrbC  TrbC
9Pnap_419773540..73824 [+], 285121582780putative conjugal transfer TrbD transmembrane protein  TrbD
10Pnap_419873846..76287 [+], 2442121582781conjugal transfer ATPase TrbE  TrbE
11Pnap_419976284..77012 [+], 729121582782conjugal transfer protein TrbJ  TrbJ
12Pnap_420077023..78396 [+], 1374121582783conjugal transfer protein TrbL  TrbL
13Pnap_420178409..79113 [+], 705121582784conjugal transfer protein TrbF  TrbF
14Pnap_420279110..80123 [+], 1014121582785conjugal transfer protein TrbG/VirB9/CagX  TrbG
15Pnap_420380126..81445 [+], 1320121582786conjugation TrbI family protein  TrbI
16Pnap_420481442..81711 [+], 270121582787hypothetical protein 
17Pnap_420582262..82612 [-], 351121582788hypothetical protein 
18Pnap_420682654..83067 [-], 414121582789hypothetical protein 
19Pnap_420783134..83589 [-], 456121582790hypothetical protein 
20Pnap_420883904..84173 [-], 270121582791hypothetical protein 
21Pnap_420985400..85678 [+], 279121582792hypothetical protein 
22Pnap_421085689..85958 [+], 270121582793hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6065 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] in_silico
 
in_silico This literature contains bioinformatics investigation