SecReT4
SecReT4
T4SS ID349
StrainBordetella petrii DSM 12804
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_010170
Location2269545..2297191
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111011
ComponentTrbKTrbLTrbNTraFTraG
Number01011

The information of T4SS components from NC_010170
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Bpet21812264604..2264897 [-], 294163856492transcriptional regulator 
2Bpet21822265103..2265450 [+], 348163856493lipoprotein 
3Bpet21832265793..2266584 [+], 792163856494hypothetical protein 
4Bpet21842266653..2266949 [+], 297163856495hypothetical protein 
5Bpet21852266976..2267833 [+], 858163856496replication initiator/transcription repressor protein 
6Bpet21862268087..2268725 [+], 639163856497partition protein 
7Bpet21872268722..2269006 [+], 285163856498hypothetical protein 
8Bpet21882269003..2269548 [+], 546163856499transposon 
9Bpet2189 (traF1)2269545..2270144 [+], 600163856500conjugal transfer protein TraF  TraF
10Bpet2190 (virD2)2270521..2272515 [+], 1995163856501conjugal transfer protein VirD2 
11Bpet2191 (fadA2)2272658..2273791 [-], 11341638565023-ketoacyl-CoA thiolase 
12Bpet21922274115..2275116 [-], 1002163856503oxidoreductase 
13Bpet21932275144..2275611 [-], 468163856504hypothetical protein 
14Bpet2194 (fadA3)2275624..2276808 [-], 1185163856505hypothetical protein 
15Bpet21952276828..2277355 [-], 528163856506hypothetical protein 
16Bpet21962277415..2277879 [+], 465163856507MarR family transcriptional regulator 
17Bpet21972277876..2279153 [+], 1278163856508transmembrane transport protein 
18Bpetpseudo_08 (nerA)2279204..2279434 [+], 231163856509hypothetical protein 
19Bpetpseudo_092279400..2279561 [+], 162163856510hypothetical protein 
20Bpet21982279687..2280583 [-], 897163856511LysR family transcriptional regulator 
21Bpet21992280769..2281881 [+], 1113163856512threonine aldolase 
22Bpet22002282008..2282391 [+], 384163856513tautomerase 
23Bpet22012282366..2283625 [+], 1260163856514MFS permease 
24Bpet22022283682..2284626 [+], 945163856515LysR family transcriptional regulator 
25Bpet22032284623..2284901 [+], 279163856516lipoprotein 
26Bpet2204 (traG1)2285138..2287141 [+], 2004163856517conjugal transfer coupling protein TraG  TraG
27Bpet22052287138..2287602 [+], 465163856518DNA-binding protein 
28Bpet2206 (trbB1)2287599..2288681 [+], 1083163856519conjugal transfer protein TrbB  TrbB
29Bpet2207 (trbC1)2288678..2289070 [+], 393163856520conjugal transfer protein TrbC  TrbC
30Bpet2208 (trbD1)2289067..2289339 [+], 273163856521conjugal transfer protein TrbD  TrbD
31Bpet2209 (trbE1)2289352..2291817 [+], 2466163856522conjugal transfer ATPase TrbE  TrbE
32Bpet2210 (trbJ1)2291814..2292539 [+], 726163856523conjugal transfer protein TrbJ  TrbJ
33Bpet22112292551..2292835 [+], 285163856524lipoprotein 
34Bpet2212 (trbL1)2292832..2294202 [+], 1371163856525conjugal transfer protein TrbL  TrbL
35Bpet2213 (trbF1)2294215..2294919 [+], 705163856526conjugal transfer protein TrbF  TrbF
36Bpet2214 (trbG1)2294916..2295908 [+], 993163856527conjugal transfer protein TrbG  TrbG
37Bpet2215 (trbI1)2295911..2297191 [+], 1281163856528conjugal transfer protein TrbI  TrbI
38Bpet22162297188..2297430 [+], 243163856529hypothetical protein 
39Bpet22172297655..2298419 [-], 765163856530hypothetical protein 
40Bpet2218 (ugpQ)2298435..2299205 [-], 771163856531glycerophosphodiester phosphodiesterase 
41Bpet22192299708..2301669 [+], 1962163856532peptidyl-prolyl cis-trans isomerase D 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6040 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] in_silico
 
in_silico This literature contains bioinformatics investigation