SecReT4
T4SS ID402
StrainEscherichia coli ED1a
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_011745
Location2198922..2212501
NameVirB
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number110111011
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_011745
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1ECED1_22552195417..2196400 [+], 984218689982hypothetical protein 
2ECED1_22562196744..2196929 [+], 186218689983hypothetical protein 
3ECED1_22572196914..2197495 [+], 582218689984hypothetical protein 
4ECED1_22582197485..2197694 [+], 210218689985putative lambdoid prophage protein from the DksA/TraR family with a zinc finger 
5ECED1_22592197937..2198065 [+], 129218689986hypothetical protein 
6ECED1_22602198634..2198867 [+], 234218689987hypothetical protein 
7ECED1_22612198922..2199650 [+], 729218689988putative type IV secretory pathway VirB1 component  VirB1
8ECED1_22622199650..2199943 [+], 294218689989putative type IV secretory pathway VirB2 component  VirB2
9ECED1_22632199956..2202694 [+], 2739218689990putative type IV secretory pathway VirB4 component  VirB4
10ECED1_22642202712..2203419 [+], 708218689991putative type IV secretory pathway VirB5 component  VirB5
11ECED1_22652203427..2203669 [+], 243218689992hypothetical protein 
12ECED1_22662203673..2204746 [+], 1074218689993putative type IV secretory pathway VirB6 component  VirB6
13ECED1_22672204968..2205651 [+], 684218689994putative type IV secretory pathway VirB8 component  VirB8
14ECED1_22682205648..2206556 [+], 909218689995putative type IV secretory pathway VirB9 component  VirB9
15ECED1_22692206586..2207842 [+], 1257218689996putative type IV secretory pathway VirB10 component  VirB10
16ECED1_22702207832..2208857 [+], 1026218689997putative type IV secretory pathway VirB11 component  VirB11
17ECED1_22712208854..2209252 [+], 399218689998hypothetical protein 
18ECED1_2272 (kikA)2209288..2209593 [+], 306218689999putative plasmid conjugation protein 
19ECED1_22732209627..2209932 [+], 306218690000hypothetical protein 
20ECED1_22742210612..2212501 [+], 1890218690001putative MobB mobilization protein  VirD4
21ECED1_22752212511..2213257 [+], 747218690002putative MobC mobilization protein 
22ECED1_22762213451..2214497 [-], 1047218690003putative Antirestriction protein ardC 
23ECED1_22772215060..2215323 [-], 264218690004Transposase, ORF A, IS3 family, IS407 group 
24ECED1_22782215465..2216523 [-], 1059218690005hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEEcoED1a-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation