SecReT4
T4SS ID417
StrainDickeya zeae Ech1591
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_012912
Location1696183..1708740
NameVirB
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number110111111
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_012912
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Dd1591_14711691841..1692863 [+], 1023251789088hypothetical protein 
2Dd1591_14731693607..1694551 [+], 945251789089hypothetical protein 
3Dd1591_14741694872..1695108 [+], 237251789090Post-segregation antitoxin CcdA 
4Dd1591_14751695111..1695425 [+], 315251789091CcdB protein 
5Dd1591_14761695443..1696174 [-], 732251789092putative MobC protein 
6Dd1591_14771696183..1698012 [-], 1830251789093type IV conjugative transfer system coupling protein TraD  VirD4
7Dd1591_14781698683..1698985 [-], 303251789094putative lipoprotein 
8Dd1591_14791699026..1700042 [-], 1017251789095Sigma 54 interacting domain-containing protein  VirB11
9Dd1591_14801700032..1701234 [-], 1203251789096conjugation TrbI family protein  VirB10
10Dd1591_14811701231..1702121 [-], 891251789097P-type conjugative transfer protein VirB9  VirB9
11Dd1591_14821702121..1702804 [-], 684251789098VirB8 family protein  VirB8
12Dd1591_14831702797..1702937 [-], 141251789099putative conjugal transfer protein  VirB7
13Dd1591_14841703025..1704053 [-], 1029251789100TrbL/VirB6 plasmid conjugal transfer protein  VirB6
14Dd1591_14851704065..1704289 [-], 225251789101hypothetical protein 
15Dd1591_14861704300..1705016 [-], 717251789102type IV secretion system family protein  VirB5
16Dd1591_14871705041..1707788 [-], 2748251789103CagE TrbE VirB component of type IV transporter system  VirB4
17Dd1591_14881707798..1708073 [-], 276251789104conjugal transfer protein TrbC  VirB2
18Dd1591_14891708093..1708740 [-], 648251789105Lytic transglycosylase catalytic  VirB1
19Dd1591_14901708810..1709043 [-], 234251789106hypothetical protein 
20Dd1591_14911709363..1710400 [+], 1038251789107hypothetical protein 
21Dd1591_14921710394..1712670 [+], 2277251789108helicase domain-containing protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEDzeEch1591-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation