SecReT4
T4SS ID426
StrainRickettsia japonica YH
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_016050
Location137397..151193; 258104..258463; 392715..400611; 1134164..1136596
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011204022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_016050
Region 1: 137397..151193
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RJP_0100133320..133565 [-], 246350273150hypothetical protein 
2RJP_0101133682..134179 [-], 498350273151hypothetical protein 
3RJP_0102 (rpmB)134970..135263 [+], 29435027315250S ribosomal protein L28 
4RJP_0103 (rpmE)135260..135496 [+], 23735027315350S ribosomal protein L31 
5RJP_0105135875..136513 [+], 639350273154GTP-binding protein 
6RJP_0106 (argB)136461..137384 [+], 924350273155acetylglutamate kinase 
7RJP_0107 (virB3)137397..137684 [+], 288350273156type IV secretory pathway, virB3-like protein  VirB3
8RJP_0108 (virB4-1)137900..140317 [+], 2418350273157type IV secretion/conjugal transfer ATPase, virB4 family  VirB4
9RJP_0109 (virB6-1)140435..143437 [+], 3003350273158trbL/virB6 plasmid Conjugative transfer protein  VirB6
10RJP_0110 (virB6-2)143424..145439 [+], 2016350273159trbL/virB6 plasmid Conjugative transfer protein  VirB6
11RJP_0111 (virB6-3)145446..148346 [+], 2901350273160trbL/virB6 plasmid Conjugative transfer protein  VirB6
12RJP_0112 (virB6-4)148518..151193 [+], 2676350273161trbL/virB6 plasmid Conjugative transfer protein  VirB6
 
Region 2: 258104..258463
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RJP_0193253621..253761 [+], 141350273240hypothetical protein 
2RJP_0194253902..254249 [-], 348350273241hypothetical protein 
3RJP_0195254419..254892 [+], 474350273242hypothetical protein 
4RJP_0196 (holA)254900..255874 [+], 975350273243DNA polymerase III subunit delta 
5RJP_0197 (coq7)256009..256548 [+], 540350273244ubiquinone biosynthesis protein coq7 
6RJP_0198 (coxC)257097..257948 [+], 852350273245cytochrome c oxidase subunit III 
7RJP_0199258104..258463 [+], 360350273246virB2-like protein  VirB2
8RJP_0200258982..259530 [-], 549350273247hypothetical protein 
9RJP_0201 (dapD)259582..260430 [+], 8493502732482,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
 
Region 3: 392715..400611
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RJP_0301388512..388916 [-], 405350273344toxin of toxin-antitoxin VapC 
2RJP_0302388907..389206 [-], 300350273345antitoxin of toxin-antitoxin (TA) system vapB 
3RJP_0303 (nuoL2)389385..390848 [-], 1464350273346NADH dehydrogenase I subunit L 
4RJP_0304 (nuoN2)391003..392304 [-], 1302350273347NADH:ubiquinone oxidoreductase subunit 2 
5RJP_0305 (mnhC)392301..392636 [-], 336350273348hypothetical protein 
6RJP_0306 (virB9-1)392715..393467 [-], 753350273349virB9 protein  VirB9
7RJP_0307 (virB8-1)393469..394110 [-], 642350273350virB8 protein  VirB8
8RJP_0308 (virB8-2)394861..395592 [+], 732350273351virB8 protein  VirB8
9RJP_0309 (virB9-2)395579..396052 [+], 474350273352virB9 protein  VirB9
10RJP_0310 (virB10)396234..397682 [+], 1449350273353virB10 protein  VirB10
11RJP_0311 (virB11)397679..398683 [+], 1005350273354virB11 protein  VirB11
12RJP_0312 (virD4)398836..400611 [+], 1776350273355virD4 protein  VirD4
13RJP_0313 (gppA)400604..402025 [+], 1422350273356guanosine pentaphosphate phosphohydrolase 
14RJP_0314402171..402746 [-], 576350273357hypothetical protein 
 
Region 4: 1134164..1136596
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RJP_0894 (ampG3)1130112..1131764 [+], 1653350273913AmpG protein 
2RJP_0895 (tatC)1131831..1132586 [+], 756350273914sec-independent protein translocase protein tatC 
3RJP_0896 (serS)1132564..1133841 [+], 1278350273915seryl-tRNA synthetase 
4RJP_0897 (virB4-2)1134164..1136596 [+], 2433350273916type IV secretion/conjugal transfer ATPase, virB4 family  VirB4
5RJP_08981136731..1140219 [+], 3489350273917hypothetical protein 
6RJP_0899 (terC)1140224..1141129 [+], 906350273918tellurium resistance protein terC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_016050