SecReT4
T4SS ID469
StrainDinoroseobacter shibae DFL 12
Repliconplasmid pDSHI03 [Browse all T4SS(s) in this replicon]
AccessionNC_009957
Location33535..50606
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number211111011
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009957
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Dshi_396528872..29183 [+], 312159046504hypothetical protein 
2Dshi_396629536..30282 [+], 747159046505hypothetical protein 
3Dshi_396730471..30821 [-], 351159046506ArsR family transcriptional regulator 
4Dshi_396830885..31736 [+], 852159046507cation efflux protein 
5Dshi_396931897..32124 [-], 228159046508hypothetical protein 
6Dshi_397032292..32549 [-], 258159046509XRE family transcriptional regulator 
7Dshi_397132674..32994 [-], 321159046510hypothetical protein 
8Dshi_397233138..33491 [+], 354159046511hypothetical protein 
9Dshi_397333535..34149 [+], 615159046512lytic transglycosylase  VirB1
10Dshi_397434146..34439 [+], 294159046513conjugal transfer protein TrbC  VirB2
11Dshi_397534432..34710 [+], 279159046514type IV secretory pathway VirB3 family protein  VirB3
12Dshi_397634700..37063 [+], 2364159046515CagE TrbE VirB component of type IV transporter system  VirB4
13Dshi_397737060..37227 [+], 168159046516hypothetical protein 
14Dshi_397837217..38371 [+], 1155159046517lytic transglycosylase catalytic  VirB1
15Dshi_397938371..39180 [+], 810159046518hypothetical protein  VirB5
16Dshi_398039197..39850 [+], 654159046519VirB8 family protein  VirB8
17Dshi_398139853..40548 [+], 696159046520conjugal transfer protein TrbG/VirB9/CagX  VirB9
18Dshi_398240545..41924 [+], 1380159046521conjugation TrbI family protein  VirB10
19Dshi_398341929..42915 [+], 987159046522type II secretion system protein E  VirB11
20Dshi_398443103..43513 [+], 411159046523hypothetical protein 
21Dshi_398543526..44602 [+], 1077159046524TrbL/VirB6 plasmid conjugal transfer protein  VirB6
22Dshi_398644763..46667 [-], 1905159046525hypothetical protein 
23Dshi_398747163..48227 [-], 1065159046526hypothetical protein 
24Dshi_398848594..50606 [-], 2013159046527TRAG family protein  VirD4
25Dshi_398950603..52936 [-], 2334159046528relaxase/mobilization nuclease family protein 
26Dshi_399052923..53516 [-], 594159046529hypothetical protein 
27Dshi_399154078..54284 [-], 207159046530hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_009957