SecReT4
T4SS ID470
StrainDinoroseobacter shibae DFL 12
Repliconplasmid pDSHI01 [Browse all T4SS(s) in this replicon]
AccessionNC_009955
Location39177..57364
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number211111011
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009955
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Dshi_363335746..37389 [+], 1644159046175hypothetical protein 
2Dshi_363437539..37766 [-], 228159046176hypothetical protein 
3Dshi_363537936..38193 [-], 258159046177XRE family transcriptional regulator 
4Dshi_363638318..38611 [-], 294159046178hypothetical protein 
5Dshi_363738780..39133 [+], 354159046179hypothetical protein 
6Dshi_363839177..39797 [+], 621159046180lytic transglycosylase  VirB1
7Dshi_363939794..40087 [+], 294159046181conjugal transfer protein TrbC  VirB2
8Dshi_364040080..40358 [+], 279159046182type IV secretory pathway VirB3 family protein  VirB3
9Dshi_364140348..42723 [+], 2376159046183CagE TrbE VirB component of type IV transporter system  VirB4
10Dshi_364242720..42887 [+], 168159046184hypothetical protein 
11Dshi_364342877..44031 [+], 1155159046185lytic transglycosylase catalytic  VirB1
12Dshi_364444031..44840 [+], 810159046186hypothetical protein  VirB5
13Dshi_364544855..45511 [+], 657159046187VirB8 family protein  VirB8
14Dshi_364645513..46208 [+], 696159046188conjugal transfer protein TrbG/VirB9/CagX  VirB9
15Dshi_364746205..47584 [+], 1380159046189conjugation TrbI family protein  VirB10
16Dshi_364847589..48575 [+], 987159046190type II secretion system protein E  VirB11
17Dshi_364948572..48766 [+], 195159046191hypothetical protein 
18Dshi_365048763..49173 [+], 411159046192hypothetical protein 
19Dshi_365149186..50262 [+], 1077159046193TrbL/VirB6 plasmid conjugal transfer protein  VirB6
20Dshi_365250623..51540 [+], 918159046194hypothetical protein 
21Dshi_365351856..53406 [-], 1551159046195DNA-directed DNA polymerase 
22Dshi_365453399..55099 [-], 1701159046196hypothetical protein 
23Dshi_365555361..57364 [-], 2004159046197TRAG family protein  VirD4
24Dshi_365657373..59706 [-], 2334159046198relaxase/mobilization nuclease family protein 
25Dshi_365759693..60274 [-], 582159046199transposase IS3/IS911 family protein 
26Dshi_365860838..61044 [-], 207159046200hypothetical protein 
27Dshi_365961245..61547 [-], 303159046201hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_009955