SecReT4
T4SS ID471
StrainSinorhizobium medicae WSM419
Repliconplasmid pSMED03 [Browse all T4SS(s) in this replicon]
AccessionNC_009622
Location56661..69439
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number211111011
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009622
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Smed_639252465..53127 [+], 663150378311hypothetical protein 
2Smed_639353195..53803 [+], 609150378312hypothetical protein 
3Smed_639453870..55345 [-], 1476150378313hypothetical protein 
4Smed_639656661..58760 [-], 2100150378314TRAG family protein  VirD4
5Smed_639758757..59785 [-], 1029150378315P-type DNA transfer ATPase VirB11  VirB11
6Smed_639859766..60977 [-], 1212150378316conjugation TrbI family protein  VirB10
7Smed_639960977..61786 [-], 810150378317P-type conjugative transfer protein VirB9  VirB9
8Smed_640061783..62478 [-], 696150378318VirB8 family protein  VirB8
9Smed_640162504..63532 [-], 1029150378319TrbL/VirB6 plasmid conjugal transfer protein  VirB6
10Smed_640263548..63775 [-], 228150378320hypothetical protein 
11Smed_640363765..64466 [-], 702150378321conjugal transfer protein  VirB5
12Smed_640464478..65566 [-], 1089150378322lytic transglycosylase catalytic  VirB1
13Smed_640565563..68022 [-], 2460150378323type IV secretion/conjugal transfer ATPase  VirB4
14Smed_640668025..68324 [-], 300150378324type IV secretory pathway VirB3 family protein  VirB3
15Smed_640768328..68666 [-], 339150378325VIRB2 type IV secretion fmaily protein  VirB2
16Smed_640868678..69439 [-], 762150378326lytic transglycosylase catalytic  VirB1
17Smed_640969812..70420 [+], 609150378327hypothetical protein 
18Smed_641070417..70953 [+], 537150378328succinoglycan biosynthesis protein ExoI-like protein 
19Smed_641170950..71651 [+], 702150378329nuclease 
20Smed_641271652..72050 [+], 399150378330hypothetical protein 
21Smed_641372052..72648 [+], 597150378331hypothetical protein 
22Smed_641472669..73085 [+], 417150378332hypothetical protein 
23Smed_641573168..73515 [-], 348150378333hypothetical protein 
24Smed_641673981..74157 [-], 177150378334hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
Identified as part of this study from NC_009622