SecReT4
T4SS ID474
StrainRoseobacter denitrificans OCh 114
Repliconplasmid pTB1 [Browse all T4SS(s) in this replicon]
AccessionNC_008386
Location7740..17629; 104010..106175
NameVirB
Functionconjugation
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number111111011
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_008386
Region 1: 7740..17629
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RD1_A00033317..3451 [-], 135115345533hypothetical protein 
2RD1_A0004 (opuD)3438..4949 [-], 1512115345534glycine betaine transporter 
3RD1_A00055140..6174 [-], 1035115345535integrase catalytic subunit 
4RD1_A00066349..7359 [-], 1011115345536hypothetical protein 
5RD1_A0007 (virB11)7740..8723 [-], 984115345537type IV secretory pathway, VirB11 component, putative  VirB11
6RD1_A00088720..10051 [-], 1332115345538putative VirB10 protein  VirB10
7RD1_A000910051..10806 [-], 756115345539putative VirB9 protein  VirB9
8RD1_A001010806..11480 [-], 675115345540VirB8 protein  VirB8
9RD1_A001111544..12716 [-], 1173115345541putative conjugal transfer protein  VirB6
10RD1_A001212720..13175 [-], 456115345542hypothetical protein 
11RD1_A001313178..13888 [-], 711115345543RC163, putative  VirB5
12RD1_A0014 (virB4)14019..16379 [-], 2361115345544VirB4 protein, putative  VirB4
13RD1_A001516372..16647 [-], 276115345545type IV secretion system protein, putative  VirB3
14RD1_A001616650..16931 [-], 282115345546hypothetical protein  VirB2
15RD1_A001716919..17629 [-], 711115345547transglycosylase, putative  VirB1
16RD1_A001817608..18087 [-], 480115345548hypothetical protein 
17RD1_A001919212..19340 [-], 129115345549hypothetical protein 
18RD1_A002119963..21318 [+], 1356115345550RC102 
19RD1_A002321315..22337 [+], 1023115345551RC101 
 
Region 2: 104010..106175
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RD1_A010899308..99955 [-], 648115345630hypothetical protein 
2RD1_A0109 (virC1)99942..100655 [-], 714115345631putative crown gall tumor protein VirC1 
3RD1_A0110100818..100955 [+], 138115345632hypothetical protein 
4RD1_A0111 (virD1)101221..101655 [+], 435115345633type IV secretion system T-DNA border endonuclease VirD1 
5RD1_A0112 (virD2)101856..104000 [+], 2145115345634VirD2 protein 
6RD1_A0114104010..106175 [+], 2166115345635type IV secretion system protein VirD4  VirD4
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Swingley WD; Sadekar S; Mastrian SD; Matthies HJ; Hao J; Ramos H; Acharya CR; Conrad AL; Taylor HL; Dejesa LC; Shah MK; O'huallachain ME; Lince MT; Blankenship RE; Beatty JT; Touchman JW (2007). The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism. J Bacteriol. 189(3):683-90. [PudMed:17098896]