SecReT4
T4SS ID478
StrainRickettsia peacockii str. Rustic
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_012730
Location327894..328253; 474480..491826; 720774..728674; 826493..828925
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico This T4SS is identified in this study.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_012730
Region 1: 327894..328253
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RPR_01985323217..323663 [+], 447238650448hypothetical protein 
2RPR_02005 (dapD)326018..326842 [-], 8252386504492,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
3RPR_02010326918..327550 [+], 633238650450hypothetical protein 
4RPR_02015327894..328253 [-], 360238650451virB2 protein  VirB2
5RPR_02020328409..329260 [-], 852238650452cytochrome c oxidase subunit III 
6RPR_02025329801..330340 [-], 5402386504532-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 
7RPR_02030 (holA)330476..331450 [-], 975238650454DNA polymerase III subunit delta 
8RPR_02035331458..331931 [-], 474238650455hypothetical protein 
 
Region 2: 474480..491826
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RPR_02770469702..470106 [-], 405238650561hypothetical protein 
2RPR_02775470189..470473 [-], 285238650562hypothetical protein 
3RPR_02780470781..471278 [-], 498238650563hypothetical protein 
4RPR_02800 (rpmB)472074..472367 [+], 29423865056450S ribosomal protein L28 
5RPR_02805472364..472600 [+], 23723865056550S ribosomal protein L31 
6RPR_02810 (engB)472958..473596 [+], 639238650566ribosome biogenesis GTP-binding protein YsxC 
7RPR_02815473544..474467 [+], 924238650567acetylglutamate kinase 
8RPR_02820474480..474767 [+], 288238650568type IV secretion system protein VirB3  VirB3
9RPR_02825474983..477400 [+], 2418238650569type IV secretion system ATPase VirB4  VirB4
10RPR_02830477518..480484 [+], 2967238650570virB6a protein  VirB6
11RPR_02835480471..482456 [+], 1986238650571virB6b protein  VirB6
12RPR_02840482463..485363 [+], 2901238650572virB6c protein  VirB6
13RPR_02845485537..488212 [+], 2676238650573virB6d protein  VirB6
14RPR_02850488365..491826 [+], 3462238650574virB6e protein  VirB6
15RPR_02885 (trmD)495051..495755 [+], 705238650575tRNA (guanine-N(1)-)-methyltransferase 
16RPR_02890 (rplS)495773..496189 [+], 41723865057650S ribosomal protein L19 
 
Region 3: 720774..728674
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RPR_04215716584..716988 [-], 405238650728Toxin of toxin-antitoxin system VapC 
2RPR_04220716979..717266 [-], 288238650729Antitoxin of toxin-antitoxin (TA) system VapB 
3RPR_04225717453..718916 [-], 1464238650730putative monovalent cation/H+ antiporter subunit D 
4RPR_04230719062..720177 [-], 1116238650731putative monovalent cation/H+ antiporter subunit D 
5RPR_04235720360..720695 [-], 336238650732putative monovalent cation/H+ antiporter subunit C 
6RPR_04240720774..721526 [-], 753238650733conjugal transfer protein trbG precursor, virB9a  VirB9
7RPR_04245721528..722226 [-], 699238650734virB8a protein  VirB8
8RPR_04250722691..722870 [+], 180238650735virB7 protein 
9RPR_04255722920..723651 [+], 732238650736virB8b protein  VirB8
10RPR_04260723638..724111 [+], 474238650737virB9b protein  VirB9
11RPR_04265724295..725743 [+], 1449238650738virB10 protein  VirB10
12RPR_04270725740..726744 [+], 1005238650739type IV secretion system ATPase VirB11  VirB11
13RPR_04275726899..728674 [+], 1776238650740type IV secretion system component VirD4  VirD4
14RPR_04280728667..730088 [+], 1422238650741exopolyphosphatase 
15RPR_04315732492..732776 [-], 285238650742phage host specificity protein 
 
Region 4: 826493..828925
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RPR_04815822537..824078 [+], 1542238650800AmpG 
2RPR_04820824145..824900 [+], 756238650801Sec-independent protein translocase protein 
3RPR_04825824878..826155 [+], 1278238650802seryl-tRNA synthetase 
4RPR_04830826493..828925 [+], 2433238650803virB4b ATPase  VirB4
5RPR_04835829061..832549 [+], 3489238650804hypothetical protein 
6RPR_04840832554..833459 [+], 906238650805tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Identified as part of this study from NC_012730