T4SS ID480
StrainRickettsia africae ESF-5
Repliconchromosome [Browse all T4SS(s) in this replicon]
Location132408..149782; 253513..253869; 386272..394168; 1127518..1129950
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components

The information of T4SS components from NC_012633
Region 1: 132408..149782
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RAF_ORF0122127867..128163 [-], 297229586337hypothetical protein 
2RAF_ORF0123128471..128842 [-], 372229586338hypothetical protein 
3RAF_ORF0124 (rpmB)129752..130045 [+], 29422958633950S ribosomal protein L28 
4RAF_ORF0125 (rpmE)130042..130278 [+], 23722958634050S ribosomal protein L31 
5RAF_ORF0126 (engB)130886..131524 [+], 639229586341ribosome biogenesis GTP-binding protein YsxC 
6RAF_ORF0127 (argB)131472..132395 [+], 924229586342Acetylglutamate kinase 
7RAF_ORF0128 (virB3)132408..132695 [+], 288229586343type IV secretion system protein VirB3  VirB3
8RAF_ORF0129 (virB4-1)132785..135202 [+], 2418229586344type IV secretion system ATPase VirB4  VirB4
9RAF_ORF0130 (virB6-1)135320..138439 [+], 3120229586345VirB6  VirB6
10RAF_ORF0133 (virB6-3)140419..143319 [+], 2901229586346VirB6  VirB6
11RAF_ORF0134 (virB6-4)143493..146168 [+], 2676229586347VirB6  VirB6
12RAF_ORF0135 (virB6-5)146321..149782 [+], 3462229586348VirB6  VirB6
13RAF_ORF0140 (trmD)153126..153830 [+], 705229586349tRNA (guanine-N(1)-)-methyltransferase 
14RAF_ORF0141 (rplS)153848..154264 [+], 41722958635050S ribosomal protein L19 
15RAF_ORF0142154434..154670 [-], 237229586351hypothetical protein 
Region 2: 253513..253869
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RAF_ORF0227249297..249644 [-], 348229586431hypothetical protein 
2RAF_ORF0228249813..250286 [+], 474229586432hypothetical protein 
3RAF_ORF0229 (holA)250294..251268 [+], 975229586433DNA polymerase III subunit delta 
4RAF_ORF0230 (coq7)251416..251955 [+], 540229586434Ubiquinone biosynthesis protein coq7 
5RAF_ORF0231 (coxC)252431..253357 [+], 927229586435Cytochrome c oxidase subunit III 
6RAF_ORF0232 (virB2)253513..253869 [+], 357229586436VirB2-like protein  VirB2
7RAF_ORF0233254213..254851 [-], 639229586437hypothetical protein 
8RAF_ORF0234 (dapD)254927..255751 [+], 8252295864382,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
Region 3: 386272..394168
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RAF_ORF0354 (vapB1)382476..382763 [-], 288229586533Antitoxin of toxin-antitoxin (TA) system VapB 
2RAF_ORF0355 (nuoL2)382950..384413 [-], 1464229586534putative monovalent cation/H+ antiporter subunit D 
3RAF_ORF0356 (nuoN2)384560..385861 [-], 1302229586535putative monovalent cation/H+ antiporter subunit D 
4RAF_ORF0357 (mnhC)385858..386193 [-], 336229586536putative monovalent cation/H+ antiporter subunit C 
5RAF_ORF0358 (virB9-1)386272..387024 [-], 753229586537VirB9  VirB9
6RAF_ORF0359 (virB8-1)387026..387724 [-], 699229586538virulence protein  VirB8
7RAF_ORF0360388185..388364 [+], 180229586539hypothetical protein 
8RAF_ORF0361 (virB8-2)388414..389145 [+], 732229586540virulence protein  VirB8
9RAF_ORF0362 (virB9-2)389132..389605 [+], 474229586541VirB9  VirB9
10RAF_ORF0363 (virB10)389789..391237 [+], 1449229586542VirB10  VirB10
11RAF_ORF0364 (virB11)391234..392238 [+], 1005229586543type IV secretion system ATPase VirB11  VirB11
12RAF_ORF0365 (virD4)392393..394168 [+], 1776229586544type IV secretion system protein VirB8  VirD4
13RAF_ORF0366 (gppA)394170..395582 [+], 1413229586545Guanosine pentaphosphate phosphohydrolase 
14RAF_ORF0367395796..396197 [-], 402229586546hypothetical protein 
15RAF_ORF0368396235..396525 [-], 291229586547hypothetical protein 
16RAF_ORF0369396984..397364 [-], 381229586548hypothetical protein 
17RAF_ORF0370397587..397871 [+], 285229586549Phage portal protein 
18RAF_ORF0371398147..398272 [-], 126229586550hypothetical protein 
Region 4: 1127518..1129950
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RAF_ORF1106 (ampG3)1123450..1125096 [+], 1647229587143AmpG protein 
2RAF_ORF1107 (tatC)1125163..1125918 [+], 756229587144Sec-independent protein translocase protein TatC 
3RAF_ORF1108 (serS)1125896..1127173 [+], 1278229587145seryl-tRNA synthetase 
4RAF_ORF1109 (virB4-2)1127518..1129950 [+], 2433229587146VirB4  VirB4
5RAF_ORF11101130086..1133574 [+], 3489229587147hypothetical protein 
6RAF_ORF1111 (terC)1133579..1134484 [+], 906229587148Tellurium resistance protein TerC 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
(1) Felsheim RF; Kurtti TJ; Munderloh UG (2009). Genome sequence of the endosymbiont Rickettsia peacockii and comparison with virulent Rickettsia rickettsii: identification of virulence factors. PLoS One. 4(12):e8361. [PudMed:20027221]
(2) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
in_silico This literature contains bioinformatics investigation