SecReT4
T4SS ID487
StrainRickettsia massiliae MTU5
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009900
Location136172..150225; 259135..259545; 398473..406382; 1204883..1207315
NameVirB
FunctionNA
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011204022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009900
Region 1: 136172..150225
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RMA_0138132534..132911 [-], 378157964163hypothetical protein 
2RMA_0139132927..133361 [-], 435157964164hypothetical protein 
3RMA_0140 (rpmB)133727..134020 [+], 29415796416550S ribosomal protein L28 
4RMA_0141 (rpmE)134011..134253 [+], 24315796416650S ribosomal protein L31 
5RMA_0142 (engB)134647..135288 [+], 642157964167ribosome biogenesis GTP-binding protein YsxC 
6RMA_0143 (argB)135236..136159 [+], 924157964168acetylglutamate kinase 
7RMA_0144 (virB3)136172..136459 [+], 288157964169type IV secretion system protein VirB3  VirB3
8RMA_0145 (virB4-1)136521..138965 [+], 2445157964170type IV secretion system ATPase VirB4  VirB4
9RMA_0146 (virB6-1)139083..142493 [+], 3411157964171VirB6  VirB6
10RMA_0147 (virB6-2)142468..144465 [+], 1998157964172VirB6  VirB6
11RMA_0148 (virB6-3)144472..147372 [+], 2901157964173VirB6  VirB6
12RMA_0149 (virB6-4)147547..150225 [+], 2679157964174VirB6  VirB6
 
Region 2: 259135..259545
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RMA_0250254866..255243 [-], 378157964252hypothetical protein 
2RMA_0251255413..255895 [+], 483157964253hypothetical protein 
3RMA_0252 (holA)255903..256877 [+], 975157964254DNA polymerase III subunit delta 
4RMA_0253 (coq7)256983..257549 [+], 567157964255ubiquinone biosynthesis protein coq7 
5RMA_0254 (coxC)258176..259027 [+], 852157964256cytochrome c oxidase subunit III 
6RMA_0255 (virB2)259135..259545 [+], 411157964257VirB2-like protein  VirB2
7RMA_0256259979..260611 [-], 633157964258hypothetical protein 
8RMA_0257 (dapD)260663..261511 [+], 8491579642592,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
 
Region 3: 398473..406382
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RMA_0390 (vapC1)394264..394626 [-], 363157964355toxin of toxin-antitoxin (TA) system VapC 
2RMA_0391 (vapB1)394678..394980 [-], 303157964356antitoxin of toxin-antitoxin (TA) system VapB 
3RMA_0392 (nuoL2)395135..396658 [-], 1524157964357putative monovalent cation/H+ antiporter subunit D 
4RMA_0393 (nuoN2)396742..398043 [-], 1302157964358putative monovalent cation/H+ antiporter subunit D 
5RMA_0394 (mnhC)398040..398381 [-], 342157964359putative monovalent cation/H+ antiporter subunit C 
6RMA_0395 (virB9-1)398473..399243 [-], 771157964360VirB9  VirB9
7RMA_0396 (virB8-1)399227..399952 [-], 726157964361virulence protein  VirB8
8RMA_0397400381..400569 [+], 189157964362hypothetical protein 
9RMA_0398 (virB8-2)400622..401353 [+], 732157964363virulence protein  VirB8
10RMA_0399 (virB9-2)401340..401813 [+], 474157964364VirB9  VirB9
11RMA_0400 (virB10)401997..403439 [+], 1443157964365VirB10  VirB10
12RMA_0401 (virB11)403397..404440 [+], 1044157964366type IV secretion system ATPase VirB11  VirB11
13RMA_0402 (virD4)404607..406382 [+], 1776157964367type IV secretion system protein VirB8  VirD4
14RMA_0403 (gppA)406392..407804 [+], 1413157964368guanosine pentaphosphate phosphohydrolase 
15RMA_0404408046..408861 [-], 816157964369hypothetical protein 
 
Region 4: 1204883..1207315
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RMA_1231 (ampG3)1200739..1202457 [+], 1719157964930AmpG protein 
2RMA_1232 (tatC)1202524..1203285 [+], 762157964931Sec-independent protein translocase protein TatC 
3RMA_1233 (serS)1203263..1204540 [+], 1278157964932seryl-tRNA synthetase 
4RMA_1234 (virB4-2)1204883..1207315 [+], 2433157964933VirB4  VirB4
5RMA_12351207448..1210957 [+], 3510157964934hypothetical protein 
6RMA_1236 (terC)1210962..1211867 [+], 906157964935tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
(2) Blanc G; Ogata H; Robert C; Audic S; Claverie JM; Raoult D (2007). Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome. Genome Res. 17(11):1657-64. [PudMed:17916642]
 
in_silico This literature contains bioinformatics investigation