SecReT4
T4SS ID488
StrainRickettsia bellii OSU 85-389
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009883
Location89113..89400; 173161..190087; 348760..349128; 423890..431585; 1458015..1460438
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011204012
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009883
Region 1: 89113..89400
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1I_00470 (rpmB)86362..86655 [+], 29415782647350S ribosomal protein L28 
2A1I_0047586652..86891 [+], 24015782647450S ribosomal protein L31 
3A1I_00480 (engB)87539..88177 [+], 639157826475ribosome biogenesis GTP-binding protein YsxC 
4A1I_0048588125..89057 [+], 933157826476acetylglutamate kinase 
5A1I_0049089113..89400 [+], 288157826477type IV secretion system protein VirB3  VirB3
6A1I_0049589502..89867 [-], 366157826478transposase 
7A1I_0050089878..90783 [+], 906157826479hypothetical protein 
8A1I_0050590752..92818 [+], 2067157826480hypothetical protein 
9A1I_0051092869..93777 [-], 909157826481transposase 
10A1I_0051593991..94206 [-], 216157826482alanyl-tRNA synthetase 
 
Region 2: 173161..190087
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1I_00920169190..169609 [-], 420157826557toxin of toxin-antitoxin (TA) system 
2A1I_00925169606..169848 [-], 243157826558antitoxin of toxin-antitoxin (TA) system Phd 
3A1I_00930169913..170851 [-], 939157826559ribosomal large subunit pseudouridine synthase RluD subfamily protein 
4A1I_00935170866..171657 [+], 792157826560uracil-DNA glycosylase 
5A1I_00940171775..172536 [-], 762157826561transposase 
6A1I_00945172542..172730 [-], 189157826562transposase 
7A1I_00950173161..175578 [+], 2418157826563type IV secretion system ATPase VirB4  VirB4
8A1I_00955175772..178891 [+], 3120157826564VirB6  VirB6
9A1I_00960178878..180902 [+], 2025157826565VirB6  VirB6
10A1I_00965180909..183776 [+], 2868157826566VirB6  VirB6
11A1I_00980186614..190087 [+], 3474157826567VirB6  VirB6
12A1I_00985190318..191343 [-], 1026157826568DNA-binding/iron metalloprotein/AP endonuclease 
13A1I_00990191340..191657 [-], 318157826569hypothetical protein 
14A1I_00995 (tgt)191641..192726 [-], 1086157826570queuine tRNA-ribosyltransferase 
15A1I_01000192956..193069 [-], 114157826571hypothetical protein 
16A1I_01005193118..193678 [-], 561157826572hypothetical protein 
 
Region 3: 348760..349128
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1I_01780344127..344453 [+], 327157826715hypothetical protein 
2A1I_01785344507..344800 [-], 294157826716hypothetical protein 
3A1I_01790345274..345765 [+], 492157826717hypothetical protein 
4A1I_01795 (holA)345762..346754 [+], 993157826718DNA polymerase III subunit delta 
5A1I_01800346775..347314 [+], 540157826719ubiquinone biosynthesis protein coq7 
6A1I_01805347761..348594 [+], 834157826720cytochrome c oxidase subunit III 
7A1I_01810348760..349128 [+], 369157826721VirB2-like protein  VirB2
8A1I_01815349375..350136 [+], 762157826722DNA uptake lipoprotein 
9A1I_01820350272..351924 [+], 1653157826723DNA repair protein RecN 
10A1I_01825351989..353476 [+], 1488157826724thermostable carboxypeptidase 
 
Region 4: 423890..431585
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1I_02270421640..422044 [-], 405157826803toxin of toxin-antitoxin (TA) system VapC 
2A1I_02275422035..422322 [-], 288157826804antitoxin of toxin-antitoxin (TA) system VapB 
3A1I_02280422420..423829 [-], 1410157826805guanosine pentaphosphate phosphohydrolase 
4A1I_02285423890..425668 [-], 1779157826806type IV secretion system protein VirB8  VirD4
5A1I_02290425801..426805 [-], 1005157826807type IV secretion system ATPase VirB11  VirB11
6A1I_02295426802..428235 [-], 1434157826808VirB10  VirB10
7A1I_02300428342..428827 [-], 486157826809VirB9  VirB9
8A1I_02305428814..429533 [-], 720157826810virulence protein  VirB8
9A1I_02310429587..429769 [-], 183157826811hypothetical protein 
10A1I_02325430935..431585 [+], 651157826812VirB9  VirB9
11A1I_02330431677..432012 [+], 336157826813monovalent cation/H+ antiporter subunit C 
12A1I_02335432090..432293 [-], 204157826814monovalent cation/H+ antiporter subunit D 
13A1I_02340432346..433458 [+], 1113157826815monovalent cation/H+ antiporter subunit D 
14A1I_02345433955..434779 [+], 825157826816transposase 
15A1I_02350434746..434910 [+], 165157826817transposase 
16A1I_02355435050..436513 [+], 1464157826818monovalent cation/H+ antiporter subunit D 
 
Region 5: 1458015..1460438
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1I_075351453419..1454327 [-], 909157827778tellurium resistance protein TerC 
2A1I_075401454331..1457813 [-], 3483157827779hypothetical protein 
3A1I_075451458015..1460438 [-], 2424157827780VirB4  VirB4
4A1I_075501460714..1461994 [-], 1281157827781seryl-tRNA synthetase 
5A1I_075551461981..1462727 [-], 747157827782Sec-independent protein translocase TatC 
6A1I_075601462803..1464062 [-], 1260157827783AmpG protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
 
in_silico This literature contains bioinformatics investigation