SecReT4
T4SS ID489
StrainRickettsia rickettsii str. 'Sheila Smith'
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009882
Location134020..151350; 255227..255586; 388822..396700; 1107497..1109929
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009882
Region 1: 134020..151350
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1G_00770129755..130165 [-], 411157828006hypothetical protein 
2A1G_00775130606..130836 [-], 231157828007hypothetical protein 
3A1G_00780130863..131009 [-], 147157828008hypothetical protein 
4A1G_00785 (rpmB)131006..131143 [-], 13815782800950S ribosomal protein L28 
5A1G_00790 (rpmB)131618..131911 [+], 29415782801050S ribosomal protein L28 
6A1G_00795131908..132144 [+], 23715782801150S ribosomal protein L31 
7A1G_00800 (engB)132498..133136 [+], 639157828012ribosome biogenesis GTP-binding protein YsxC 
8A1G_00805133207..134007 [+], 801157828013acetylglutamate kinase 
9A1G_00810134020..134307 [+], 288157828014type IV secretion system protein VirB3  VirB3
10A1G_00815134523..136940 [+], 2418157828015type IV secretion system ATPase VirB4  VirB4
11A1G_00820137058..140018 [+], 2961157828016hypothetical protein  VirB6
12A1G_00825140005..141990 [+], 1986157828017hypothetical protein  VirB6
13A1G_00830141997..144897 [+], 2901157828018hypothetical protein  VirB6
14A1G_00835145100..147736 [+], 2637157828019hypothetical protein  VirB6
15A1G_00840147889..151350 [+], 3462157828020hypothetical protein  VirB6
16A1G_00865 (trmD)154188..154316 [+], 129157828021tRNA (guanine-N(1)-)-methyltransferase 
17A1G_00870154316..154411 [+], 96157828022hypothetical protein 
18A1G_00875 (trmD)154664..155368 [+], 705157828023tRNA (guanine-N(1)-)-methyltransferase 
19A1G_00880 (rplS)155386..155802 [+], 41715782802450S ribosomal protein L19 
20A1G_00885155972..156208 [-], 237157828025hypothetical protein 
 
Region 2: 255227..255586
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1G_01345250612..250890 [+], 279157828115hypothetical protein 
2A1G_01350251031..251372 [-], 342157828116hypothetical protein 
3A1G_01355251540..252013 [+], 474157828117hypothetical protein 
4A1G_01360 (holA)252021..252995 [+], 975157828118DNA polymerase III subunit delta 
5A1G_01365253131..253670 [+], 540157828119ubiquinone biosynthesis protein Coq7 
6A1G_01370254225..254356 [-], 132157828120hypothetical protein 
7A1G_01375254355..255071 [+], 717157828121cytochrome c oxidase subunit III 
8A1G_01380255227..255586 [+], 360157828122hypothetical protein  VirB2
9A1G_01385255930..256562 [-], 633157828123hypothetical protein 
10A1G_01390 (dapD)256639..257463 [+], 8251578281242,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
11A1G_01395257674..257922 [-], 249157828125hypothetical protein 
12A1G_01400257903..258142 [-], 240157828126hypothetical protein 
13A1G_01405258567..258764 [-], 198157828127hypothetical protein 
14A1G_01410258893..259162 [-], 270157828128hypothetical protein 
15A1G_01415259150..259308 [-], 159157828129hypothetical protein 
16A1G_01420259379..259531 [-], 153157828130hypothetical protein 
 
Region 3: 388822..396700
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1G_02175384409..384507 [+], 99157828256hypothetical protein 
2A1G_02180384631..385035 [-], 405157828257hypothetical protein 
3A1G_02185385026..385313 [-], 288157828258hypothetical protein 
4A1G_02190385500..386963 [-], 1464157828259putative monovalent cation/H+ antiporter subunit D 
5A1G_02195387110..388225 [-], 1116157828260putative monovalent cation/H+ antiporter subunit D 
6A1G_02200388408..388743 [-], 336157828261putative monovalent cation/H+ antiporter subunit C 
7A1G_02205388822..389574 [-], 753157828262VirB9 protein  VirB9
8A1G_02210389576..390274 [-], 699157828263virB8 protein  VirB8
9A1G_02215390739..390918 [+], 180157828264hypothetical protein 
10A1G_02220390968..391699 [+], 732157828265hypothetical protein  VirB8
11A1G_02225391686..392159 [+], 474157828266virB9 protein  VirB9
12A1G_02230392342..393790 [+], 1449157828267virB10 protein  VirB10
13A1G_02235393787..394791 [+], 1005157828268type IV secretion system ATPase VirB11  VirB11
14A1G_02240394925..396700 [+], 1776157828269type IV secretion system protein VirB8  VirD4
15A1G_02245396693..398114 [+], 1422157828270guanosine pentaphosphate phosphohydrolase 
16A1G_02250398328..398639 [-], 312157828271hypothetical protein 
17A1G_02255399575..399814 [-], 240157828272hypothetical protein 
18A1G_02270400518..400802 [-], 285157828273hypothetical protein 
 
Region 4: 1107497..1109929
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1G_066551103534..1105075 [+], 1542157829046AmpG protein 
2A1G_066601105142..1105897 [+], 756157829047sec-independent protein translocase protein TatC 
3A1G_066651105875..1107152 [+], 1278157829048seryl-tRNA synthetase 
4A1G_066701107497..1109929 [+], 2433157829049virB4 protein  VirB4
5A1G_066751110065..1113553 [+], 3489157829050hypothetical protein 
6A1G_066801113558..1114463 [+], 906157829051tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
 
in_silico This literature contains bioinformatics investigation