SecReT4
T4SS ID490
StrainRickettsia akari str. Hartford
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009881
Location136910..154547; 259904..260263; 382294..390172; 1086555..1088987
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009881
Region 1: 136910..154547
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1C_00735132123..132902 [+], 780157825268ABC transporter permease 
2A1C_00740133135..133890 [+], 756157825269ribonucleotide ABC transporter ATP-binding protein 
3A1C_00745133892..134140 [+], 249157825270hypothetical protein 
4A1C_00750 (rpmB)134219..134512 [+], 29415782527150S ribosomal protein L28 
5A1C_00755134509..134745 [+], 23715782527250S ribosomal protein L31 
6A1C_00760 (engB)135384..136022 [+], 639157825273ribosome biogenesis GTP-binding protein YsxC 
7A1C_00780136910..137197 [+], 288157825274type IV secretion system protein VirB3  VirB3
8A1C_00785137496..139913 [+], 2418157825275type IV secretion system ATPase VirB4  VirB4
9A1C_00790140088..143114 [+], 3027157825276TrbL/VirB6 plasmid conjugative transfer protein  VirB6
10A1C_00795143101..145119 [+], 2019157825277TrbL/VirB6 plasmid conjugative transfer protein  VirB6
11A1C_00800145126..148056 [+], 2931157825278hypothetical protein  VirB6
12A1C_00805148265..150895 [+], 2631157825279TrbL/VirB6 plasmid conjugative transfer protein  VirB6
13A1C_00810151083..154547 [+], 3465157825280TrbL/VirB6 plasmid conjugative transfer protein  VirB6
14A1C_00815154665..154781 [+], 117157825281antitoxin of toxin-antitoxin system VapB 
15A1C_00820154859..155110 [+], 252157825282toxin of toxin-antitoxin system 
16A1C_00825155369..156418 [+], 1050157825283phosphate acetyltransferase 
17A1C_00830156420..157577 [+], 1158157825284acetate kinase 
18A1C_00835 (trmD)157903..158067 [+], 165157825285tRNA (guanine-N(1)-)-methyltransferase 
19A1C_00840 (trmD)158144..158848 [+], 705157825286tRNA (guanine-N(1)-)-methyltransferase 
20A1C_00845 (rplS)158864..159280 [+], 41715782528750S ribosomal protein L19 
 
Region 2: 259904..260263
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1C_01345255508..255852 [-], 345157825375hypothetical protein 
2A1C_01350256028..256501 [+], 474157825376hypothetical protein 
3A1C_01355 (holA)256509..257489 [+], 981157825377DNA polymerase III subunit delta 
4A1C_01360257689..258228 [+], 540157825378ubiquinone biosynthesis protein Coq7 
5A1C_01365258256..258414 [-], 159157825379hypothetical protein 
6A1C_01370258912..259748 [+], 837157825380cytochrome c oxidase subunit III 
7A1C_01375259904..260263 [+], 360157825381hypothetical protein  VirB2
8A1C_01380260562..261182 [-], 621157825382hypothetical protein 
9A1C_01385 (dapD)261266..262090 [+], 8251578253832,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
10A1C_01390262627..262734 [-], 108157825384hypothetical protein 
11A1C_01395262758..263039 [-], 282157825385hypothetical protein 
12A1C_01400263531..263791 [-], 261157825386hypothetical protein 
13A1C_01405263824..263982 [-], 159157825387hypothetical protein 
 
Region 3: 382294..390172
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1C_02010378077..378271 [-], 195157825501toxin of toxin-antitoxin system VapC 
2A1C_02015378813..380276 [-], 1464157825502putative monovalent cation/H+ antiporter subunit D 
3A1C_02020380191..380295 [+], 105157825503putative monovalent cation/H+ antiporter subunit D 
4A1C_02025380497..381597 [-], 1101157825504putative monovalent cation/H+ antiporter subunit D 
5A1C_02030381653..381796 [+], 144157825505putative monovalent cation/H+ antiporter subunit C 
6A1C_02035381780..382115 [-], 336157825506putative monovalent cation/H+ antiporter subunit C 
7A1C_02040382294..383046 [-], 753157825507VirB9 protein  VirB9
8A1C_02045383048..383746 [-], 699157825508VirB8 protein  VirB8
9A1C_02050384210..384389 [+], 180157825509hypothetical protein 
10A1C_02055384440..385171 [+], 732157825510VirB8 protein  VirB8
11A1C_02060385158..385634 [+], 477157825511VirB9 protein precursor  VirB9
12A1C_02065385779..387233 [+], 1455157825512virB10 protein  VirB10
13A1C_02070387230..388234 [+], 1005157825513type IV secretion system ATPase VirB11  VirB11
14A1C_02075388397..390172 [+], 1776157825514type IV secretion system protein VirB8  VirD4
15A1C_02080390182..391594 [+], 1413157825515guanosine pentaphosphate phosphohydrolase 
16A1C_02105393376..393597 [+], 222157825516cell surface antigen-like protein Sca7 
17A1C_02110393606..393824 [+], 219157825517cell surface antigen-like protein Sca7 
18A1C_02115393836..394366 [+], 531157825518cell surface antigen-like protein Sca7 
19A1C_02120394596..394814 [+], 219157825519cell surface antigen-like protein Sca7 
20A1C_02125394811..394873 [+], 63157825520hypothetical protein 
 
Region 4: 1086555..1088987
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1C_060651082953..1084218 [+], 1266157826234AmpG protein 
2A1C_060701084285..1085040 [+], 756157826235Sec-independent protein translocase protein TatC 
3A1C_060751085018..1086295 [+], 1278157826236seryl-tRNA synthetase 
4A1C_060801086555..1088987 [+], 2433157826237Type IV secretion/conjugal transfer ATPase, VirB4 family protein  VirB4
5A1C_060851089243..1092779 [+], 3537157826238hypothetical protein 
6A1C_060901092784..1093689 [+], 906157826239tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
 
in_silico This literature contains bioinformatics investigation