SecReT4
T4SS ID491
StrainRickettsia canadensis str. McKiel
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009879
Location111737..129292; 195946..196302; 846803..854733; 1020985..1023417
NameVirB
FunctionNA
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_009879
Region 1: 111737..129292
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1E_00460107108..107887 [+], 780157803278ABC transporter permease protein 
2A1E_00465107890..108651 [+], 762157803279ribonucleotide ABC transporter ATP-binding protein 
3A1E_00470 (alr)108694..108942 [+], 249157803280alanine racemase 
4A1E_00475 (rpmB)109015..109308 [+], 29415780328150S ribosomal protein L28 
5A1E_00480109305..109541 [+], 23715780328250S ribosomal protein L31 
6A1E_00485 (engB)110321..110980 [+], 660157803283ribosome biogenesis GTP-binding protein YsxC 
7A1E_00490111131..111256 [+], 126157803284acetylglutamate kinase 
8A1E_00495111737..112024 [+], 288157803285type IV secretion system protein VirB3  VirB3
9A1E_00500112279..114696 [+], 2418157803286type IV secretion system ATPase VirB4  VirB4
10A1E_00505114838..118152 [+], 3315157803287TrbL/VirB6 plasmid conjugative transfer protein  VirB6
11A1E_00510118139..120157 [+], 2019157803288TrbL/VirB6 plasmid conjugative transfer protein  VirB6
12A1E_00515120164..123070 [+], 2907157803289VirB6-like protein of the type IV secretion system  VirB6
13A1E_00520123077..125743 [+], 2667157803290hypothetical protein  VirB6
14A1E_00525125852..129292 [+], 3441157803291hypothetical protein  VirB6
15A1E_00540130793..130897 [+], 105157803292GTPase EngB 
16A1E_00545130964..131041 [+], 78157803293hypothetical protein 
17A1E_00550132049..132165 [+], 117157803294hypothetical protein 
18A1E_00555132389..132664 [+], 276157803295hypothetical protein 
19A1E_00560 (trmD)132753..133415 [+], 663157803296tRNA (guanine-N(1)-)-methyltransferase 
20A1E_00565 (rplS)133672..134088 [+], 41715780329750S ribosomal protein L19 
 
Region 2: 195946..196302
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1E_00835191118..191339 [-], 222157803351hypothetical protein 
2A1E_00840191333..192448 [-], 1116157803352hypothetical protein 
3A1E_00845 (nusB)193122..193562 [-], 441157803353transcription antitermination protein NusB 
4A1E_00850 (dapD)194099..194923 [-], 8251578033542,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
5A1E_00855195003..195623 [+], 621157803355hypothetical protein 
6A1E_00860195946..196302 [-], 357157803356hypothetical protein  VirB2
7A1E_00865196452..197303 [-], 852157803357cytochrome c oxidase subunit III 
8A1E_00870 (dapD)197901..198440 [-], 5401578033582,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 
9A1E_00875 (holA)198589..199560 [-], 972157803359DNA polymerase III subunit delta 
10A1E_00880199727..200197 [-], 471157803360hypothetical protein 
11A1E_00885200419..200691 [+], 273157803361hypothetical protein 
12A1E_00890200877..200969 [-], 93157803362hypothetical protein 
 
Region 3: 846803..854733
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1E_04130842599..842769 [-], 171157803988hypothetical protein 
2A1E_04135842858..842956 [-], 99157803989hypothetical protein 
3A1E_04140843134..843499 [-], 366157803990hypothetical protein 
4A1E_04150844507..844620 [-], 114157803991hypothetical protein 
5A1E_04155845381..846793 [-], 1413157803992hypothetical protein 
6A1E_04160846803..848578 [-], 1776157803993type IV secretion system component VirD4  VirD4
7A1E_04165848751..849755 [-], 1005157803994type IV secretion system ATPase VirB11  VirB11
8A1E_04170849752..851200 [-], 1449157803995hypothetical protein  VirB10
9A1E_04175851337..851819 [-], 483157803996hypothetical protein  VirB9
10A1E_04180851806..852534 [-], 729157803997hypothetical protein  VirB8
11A1E_04185853281..853979 [+], 699157803998hypothetical protein  VirB8
12A1E_04190853981..854733 [+], 753157803999hypothetical protein  VirB9
13A1E_04195854736..855071 [+], 336157804000putative monovalent cation/H+ antiporter subunit C 
14A1E_04200855204..856490 [+], 1287157804001putative monovalent cation/H+ antiporter subunit D 
15A1E_04205856821..857012 [+], 192157804002hypothetical protein 
16A1E_04210857205..858668 [+], 1464157804003putative monovalent cation/H+ antiporter subunit D 
17A1E_04215858731..858883 [+], 153157804004antitoxin of toxin-antitoxin system VapB 
18A1E_04220859012..859389 [+], 378157804005putative monovalent cation/H+ antiporter subunit D 
 
Region 4: 1020985..1023417
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1A1E_049901017160..1018542 [+], 1383157804150ampG protein 
2A1E_04995 (dnaE)1018601..1019356 [+], 756157804151DNA polymerase III subunit alpha 
3A1E_050001019334..1020611 [+], 1278157804152seryl-tRNA synthetase 
4A1E_050051020985..1023417 [+], 2433157804153Type IV secretion/conjugal transfer ATPase, VirB4 family protein  VirB4
5A1E_050101023567..1027058 [+], 3492157804154hypothetical protein 
6A1E_050151027063..1027971 [+], 909157804155tellurium resistance protein TerC 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
 
in_silico This literature contains bioinformatics investigation