SecReT4
T4SS ID507
StrainOrientia tsutsugamushi str. Ikeda
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_010793
Location4977..7430; 799272..814226; 963611..964384; 1108251..1109703; 1437129..1439345; 1594095..1599486
NameVirB
FunctionNA
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number021205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_010793
Region 1: 4977..7430
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_0001457..4977 [-], 4521189182908hypothetical protein 
2OTT_0002 (virB4)4977..7430 [-], 2454189182909type IV secretion system protein VirB4  VirB4
3OTT_0003 (gap)7705..8721 [+], 1017189182910glyceraldehyde 3-phosphate dehydrogenase 
4OTT_0004 (pgk)8802..10022 [+], 1221189182911phosphoglycerate kinase 
5OTT_000510036..10329 [+], 294189182912hypothetical protein 
6OTT_0006 (proS)10343..11644 [+], 1302189182913prolyl-tRNA synthetase 
 
Region 2: 799272..814226
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_0766794494..795282 [-], 789189183673Mg-dependent DNase, TatD family 
2OTT_0767 (metS)795294..796829 [-], 1536189183674methionyl-tRNA synthetase 
3OTT_0768 (priA)797016..798956 [+], 1941189183675primosome assembly protein PriA 
4OTT_0769 (virB3)799272..799559 [+], 288189183676type IV secretion system protein VirB3  VirB3
5OTT_0770 (virB4)799570..801987 [+], 2418189183677type IV secretion system ATPase VirB4  VirB4
6OTT_0771 (virB6)801987..804434 [+], 2448189183678type IV secretion system protein VirB6  VirB6
7OTT_0772 (virB6)804456..808343 [+], 3888189183679type IV secretion system protein VirB6  VirB6
8OTT_0773 (virB6)808397..811669 [+], 3273189183680type IV secretion system protein VirB6  VirB6
9OTT_0774 (virB6)811662..814226 [+], 2565189183681type IV secretion system protein VirB6  VirB6
10OTT_0775 (proP2)814263..815516 [+], 1254189183682proline/betaine transporter 
11OTT_0776 (mutL)815544..817586 [+], 2043189183683DNA mismatch repair protein MutL1 
12OTT_0777 (gltX)817767..819113 [+], 1347189183684glutamyl-tRNA synthetase 
 
Region 3: 963611..964384
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_0917959381..960142 [-], 762189183824hypothetical protein 
2OTT_0918960633..961007 [-], 375189183825transposase 
3OTT_0919961019..961486 [-], 468189183826transposase 
4OTT_0920 (tlc5)961866..963365 [+], 1500189183827ADP,ATP carrier protein homolog 
5OTT_0921963611..963967 [+], 357189183828hypothetical protein  VirB2
6OTT_0922963983..964384 [+], 402189183829hypothetical protein  VirB2
7OTT_0923 (ruvC)964532..965011 [+], 480189183830Holliday junction resolvase 
8OTT_0924 (nifR3)965068..966030 [+], 963189183831NifR3 protein 
9OTT_0925966065..966403 [-], 339189183832hypothetical protein 
10OTT_0926 (ubiG)966559..967299 [+], 7411891838333-demethylubiquinone-9 3-methyltransferase 
11OTT_0927 (hemK)967286..968152 [-], 867189183834possible protoporphyrinogen oxidase 
12OTT_0928 (truA)968154..969005 [-], 852189183835tRNA pseudouridine synthase A 
 
Region 4: 1108251..1109703
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_1076 (thyX)1103791..1104693 [+], 903189183983FAD-dependent thymidylate synthase 
2OTT_1077 (virB8)1108251..1108952 [+], 702189183984type IV secretion system protein VirB8  VirB8
3OTT_1078 (trbG)1108942..1109703 [+], 762189183985conjugal transfer protein TrbG precursor  VirB9
4OTT_10791109959..1110348 [-], 390189183986hypothetical protein 
5OTT_1080 (ftsY)1110451..1111398 [+], 948189183987signal recognition particle receptor FtsY 
 
Region 5: 1437129..1439345
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_13981432349..1432630 [-], 282189184305integrase 
2OTT_13991432694..1433068 [-], 375189184306transposase 
3OTT_14001433022..1433195 [-], 174189184307transposase 
4OTT_14011433788..1434048 [-], 261189184308hypothetical protein 
5OTT_1402 (coxB)1434580..1435440 [-], 861189184309cytochrome c oxidase polypeptide II 
6OTT_14031435487..1435963 [-], 477189184310hypothetical protein 
7OTT_1404 (virB6)1437129..1439345 [+], 2217189184311type IV secretion system protein VirB6  VirB6
8OTT_14051440465..1440689 [-], 225189184312hypothetical protein 
9OTT_14061440890..1441168 [-], 279189184313TPR repeat-containing protein 07 
 
Region 6: 1594095..1599486
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_15631589234..1590373 [-], 1140189184470reverse transcriptase 
2OTT_15641590357..1590656 [+], 300189184471hypothetical protein 
3OTT_15651591183..1592982 [-], 1800189184472hypothetical protein 
4OTT_15661593495..1593878 [-], 384189184473transposase 
5OTT_1567 (virD4)1594095..1595867 [-], 1773189184474type IV secretion system component VirD4  VirD4
6OTT_1568 (virB11)1595867..1596856 [-], 990189184475type IV secretion system ATPase VirB11  VirB11
7OTT_1569 (virB10)1596856..1598385 [-], 1530189184476type IV secretion system protein VirB10  VirB10
8OTT_1570 (virB9)1598385..1598822 [-], 438189184477type IV secretion system protein VirB9  VirB9
9OTT_1571 (virB8)1598806..1599486 [-], 681189184478type IV secretion system protein VirB8  VirB8
10OTT_1572 (dnaN)1599725..1601023 [-], 1299189184479DNA polymerase III subunit beta 
11OTT_1573 (dnaA)1601042..1602454 [-], 1413189184480chromosomal replication initiation protein 
12OTT_15741602755..1603063 [+], 309189184481hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]