SecReT4
T4SS ID524
StrainSphingomonas wittichii RW1
Repliconplasmid pSWIT01 [Browse all T4SS(s) in this replicon]
AccessionNC_009507
Location50996..56346; 113404..118729; 269613..291833
NameTra_F
FunctionNA
ClassificationType IVA; Type F
insolico This T4SS is identified in this study.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number011211112
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number010101110
ComponentTraY_FTrbC_FOrf169_F
Number011

The information of T4SS components from NC_009507
Region 1: 50996..56346
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Swit_515346055..47425 [-], 1371148550592pyruvate dehydrogenase subunit beta 
2Swit_515447425..48507 [-], 1083148550593pyruvate dehydrogenase (acetyl-transferring) 
3Swit_515548608..49519 [+], 912148550594LysR family transcriptional regulator 
4Swit_515649557..50216 [-], 660148550595hypothetical protein 
5Swit_515750222..50731 [-], 510148550596hypothetical protein 
6Swit_515850745..50945 [-], 201148550597hypothetical protein 
7Swit_515950996..54040 [-], 3045148550598conjugative relaxase region-like protein  TraI_F
8Swit_516054040..56346 [-], 2307148550599hypothetical protein  TraD_F
9Swit_516156336..56626 [-], 291148550600hypothetical protein 
10Swit_516257446..57670 [-], 225148550601hypothetical protein 
11Swit_516358042..58857 [-], 816148550602hypothetical protein 
12Swit_516459418..59702 [+], 285148550603hypothetical protein 
13Swit_516559709..60398 [-], 690148550604hypothetical protein 
 
Region 2: 113404..118729
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Swit_5218108667..109212 [-], 546148550655hypothetical protein 
2Swit_5219109320..110858 [-], 1539148550656signal transduction histidine kinase 
3Swit_5220111270..112196 [+], 927148550657hypothetical protein 
4Swit_5221112193..112594 [-], 402148550658hypothetical protein 
5Swit_5222112608..113180 [-], 573148550659hypothetical protein 
6Swit_5223113404..116436 [-], 3033148550660conjugative relaxase region-like protein  TraI_F
7Swit_5224116438..118729 [-], 2292148550661hypothetical protein  TraD_F
8Swit_5225118719..119009 [-], 291148550662hypothetical protein 
9Swit_5226119814..120032 [+], 219148550663hypothetical protein 
10Swit_5227120147..120371 [-], 225148550664hypothetical protein 
11Swit_5228121149..121556 [-], 408148550665hypothetical protein 
12Swit_5229121760..122734 [-], 975148550666hypothetical protein 
13Swit_5230123283..123498 [+], 216148550667hypothetical protein 
 
Region 3: 269613..291833
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Swit_5355265012..265587 [+], 576148550791CheB methylesterase 
2Swit_5356265584..266717 [+], 1134148550792response regulator receiver sensor signal transduction histidine kinase 
3Swit_5357266733..267236 [-], 504148550793hypothetical protein 
4Swit_5358267384..267689 [-], 306148550794hypothetical protein 
5Swit_5359267890..268159 [+], 270148550795hypothetical protein 
6Swit_5360268207..269502 [-], 1296148550796hypothetical protein 
7Swit_5361269613..270614 [+], 1002148550797lytic transglycosylase, catalytic  Orf169_F
8Swit_5362270670..271218 [-], 549148550798hypothetical protein 
9Swit_5363271314..271826 [-], 513148550799hypothetical protein 
10Swit_5364272080..272508 [+], 429148550800hypothetical protein 
11Swit_5365272550..272855 [+], 306148550801Type IV conjugative transfer system protein TraL  TraL_F
12Swit_5366272857..273423 [+], 567148550802TraE family protein  TraE_F
13Swit_5367273420..274223 [+], 804148550803hypothetical protein 
14Swit_5368274228..275559 [+], 1332148550804TraB pilus assembly family protein  TraB_F
15Swit_5369275546..276427 [+], 882148550805hypothetical protein 
16Swit_5370276403..277416 [+], 1014148550806Type IV conjugative transfer system protein TraV  TraV_F
17Swit_5371277418..280012 [+], 2595148550807Type-IV secretion system protein TraC  TraC_F
18Swit_5372280018..280392 [+], 375148550808hypothetical protein 
19Swit_5373280385..281032 [+], 648148550809hypothetical protein 
20Swit_5374281013..281576 [+], 564148550810type IV secretory pathway protease TraF-like protein 
21Swit_5375281573..282226 [+], 654148550811Type-F conjugative transfer system protein TraW  TraW_F
22Swit_5376282226..282498 [+], 273148550812hypothetical protein 
23Swit_5377282495..283517 [+], 1023148550813TraU family protein  TraU_F
24Swit_5378283528..284271 [+], 744148550814type-F conjugative transfer system pilin assembly protein TrbC  TrbC_F
25Swit_5379284271..286133 [+], 1863148550815conjugal transfer mating pair stabilization protein TraN  TraN_F
26Swit_5380286171..286506 [+], 336148550816hypothetical protein 
27Swit_5381286722..287537 [+], 816148550817TraF-like protein  TraF_F
28Swit_5382287537..289000 [+], 1464148550818TraH family protein  TraH_F
29Swit_5383289017..291833 [+], 2817148550819TraG domain-containing protein  TraG_F
30Swit_5384292116..292433 [+], 318148550820hypothetical protein 
31Swit_5385292607..293332 [+], 726148550821hypothetical protein 
32Swit_5386293344..293967 [+], 624148550822hypothetical protein 
33Swit_5387294041..294277 [-], 237148550823acyl carrier protein 
34Swit_5388294496..295836 [-], 1341148550824metal dependent phosphohydrolase 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_009507