SecReT4
T4SS ID536
StrainAliivibrio salmonicida LFI1238
Repliconplasmid pVSAL840 [Browse all T4SS(s) in this replicon]
AccessionNC_011311
Location111..27827
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number111

The information of T4SS components from NC_011311
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1VSAL_p840_01 (traY)111..281 [+], 171215778351conjugative transfer protein TraY  TraY_F
2VSAL_p840_02 (traA)423..704 [+], 282215778352conjugative transfer protein TraA, putative fimbrial protein precursor  TraA_F
3VSAL_p840_03 (traL)733..1035 [+], 303215778353conjugative transfer protein TraL  TraL_F
4VSAL_p840_04 (traE)1035..1595 [+], 561215778354conjugative transfer protein TraE  TraE_F
5VSAL_p840_05 (traK)1592..2347 [+], 756215778355conjugative transfer protein TraK  TraK_F
6VSAL_p840_06 (traB)2337..3767 [+], 1431215778356conjugative transfer protein TraB  TraB_F
7VSAL_p840_073780..4181 [+], 402215778357putative lipoprotein, putative TraV protein  TraV_F
8VSAL_p840_08 (traC)4191..6722 [+], 2532215778358conjugative transfer protein TraC  TraC_F
9VSAL_p840_09 (trbI)6719..7066 [+], 348215778359conjugative transfer protein TrbI 
10VSAL_p840_10 (traW)7063..7719 [+], 657215778360conjugative transfer protein TraW  TraW_F
11VSAL_p840_11 (traU)7732..8736 [+], 1005215778361conjugative transfer protein TraU  TraU_F
12VSAL_p840_129050..9817 [+], 768215778362hypothetical protein, putative conjugative transfer protein TrbC  TrbC_F
13VSAL_p840_13 (traN)9821..11539 [+], 1719215778363conjugal transfer mating pair stabilization protein TraN  TraN_F
14VSAL_p840_14 (traF)11549..12292 [+], 744215778364conjugative transfer protein TraF  TraF_F
15VSAL_p840_1512282..13049 [+], 768215778365membrane protein 
16VSAL_p840_16 (trbB)13119..13544 [+], 426215778366conjugative transfer protein TrbB 
17VSAL_p840_17 (traH)13541..14926 [+], 1386215778367conjugative transfer protein TraH  TraH_F
18VSAL_p840_18 (traG)14923..17718 [+], 2796215778368conjugative transfer protein TraG  TraG_F
19VSAL_p840_1917817..18314 [+], 498215778369hypothetical protein 
20VSAL_p840_20 (traD)18326..20404 [+], 2079215778370conjugative transfer protein TraD  TraD_F
21VSAL_p840_21 (traI)20545..26355 [+], 5811215778371protein TraI (DNA helicase I)  TraI_F
22VSAL_p840_2226399..26752 [-], 354215778372hypothetical protein 
23VSAL_p840_23 (pilT)27390..27827 [-], 438215778373transglycosylase PilT  Orf169_F
24VSAL_p840_2427861..28256 [-], 396215778374hypothetical protein 
25VSAL_p840_25 (ardC)28293..29294 [-], 1002215778375antirestriction protein ArdC 
26VSAL_p840_2630133..30489 [-], 357215778376hypothetical protein 
27VSAL_p840_2730649..31068 [-], 420215778377hypothetical protein 
28VSAL_p840_28 (hupA)31361..31636 [+], 276215778378DNA-binding protein HU-alpha 
29VSAL_p840_2931792..32052 [-], 261215778379hypothetical protein 
30VSAL_p840_3032178..32468 [-], 291215778380hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
(1) Hjerde E; Lorentzen MS; Holden MT; Seeger K; Paulsen S; Bason N; Churcher C; Harris D; Norbertczak H; Quail MA; Sanders S; Thurston S; Parkhill J; Willassen NP; Thomson NR (2008). The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. BMC Genomics. 0.802777778. [PudMed:19099551]