SecReT4
T4SS ID560
StrainOrientia tsutsugamushi str. Ikeda
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_010793
Location1942394..1963342
NameTra_F
FunctionNA
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number011111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number000101100
ComponentTraY_FTrbC_FOrf169_F
Number010

The information of T4SS components from NC_010793
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_1901 (ndk)1938003..1938428 [-], 426189184808nucleoside diphosphate kinase 
2OTT_19021940379..1941518 [+], 1140189184809integrase 
3OTT_19031941521..1941991 [+], 471189184810peroxiredoxin, AhpC/TSA family protein 
4OTT_19041942059..1942394 [+], 336189184811hypothetical protein 
5OTT_19051942394..1942945 [+], 552189184812conjugative transfer protein TraE  TraE_F
6OTT_19061942942..1943418 [+], 477189184813hypothetical protein 
7OTT_19071943783..1944112 [+], 330189184814hypothetical protein 
8OTT_19081944431..1945249 [+], 819189184815conjugative transfer protein TraB  TraB_F
9OTT_19091945299..1945481 [+], 183189184816conjugative transfer protein TraB 
10OTT_19101945481..1945810 [+], 330189184817hypothetical protein  TraV_F
11OTT_19111945791..1947593 [+], 1803189184818conjugative transfer protein TraC  TraC_F
12OTT_19121947492..1948502 [-], 1011189184819ankyrin repeat-containing protein 06_04 
13OTT_19131948657..1949244 [+], 588189184820conjugative transfer protein TraU  TraU_F
14OTT_19141949267..1949650 [+], 384189184821conjugative transfer protein TrbC  TrbC_F
15OTT_19151949647..1951341 [+], 1695189184822conjugative transfer protein TraN  TraN_F
16OTT_19161951498..1952676 [+], 1179189184823ankyrin repeat-containing protein 04_02 
17OTT_19171952880..1953602 [+], 723189184824conjugative transfer protein TraF  TraF_F
18OTT_19181953599..1953745 [+], 147189184825conjugative transfer protein TraH 
19OTT_19191953827..1954492 [+], 666189184826conjugative transfer protein TraH  TraH_F
20OTT_19201954506..1954901 [+], 396189184827conjugative transfer protein TraH 
21OTT_19211954901..1955236 [+], 336189184828conjugative transfer protein TraG  TraG_F
22OTT_19221955413..1956375 [+], 963189184829transposase 
23OTT_19231956391..1956951 [-], 561189184830transposase 
24OTT_19241957003..1958208 [-], 1206189184831conjugative transfer protein TraI 
25OTT_19251958389..1959453 [+], 1065189184832hypothetical protein 
26OTT_19261959757..1960581 [-], 825189184833conjugative transfer protein TraA 
27OTT_19271960596..1962608 [-], 2013189184834conjugative transfer protein TraA  TraI_F
28OTT_19281962887..1963342 [+], 456189184835conjugative transfer protein TraD  TraD_F
29OTT_19291963410..1964432 [-], 1023189184836hypothetical protein 
30OTT_19301964553..1965128 [-], 576189184837RelA/SpoT-related protein 
31OTT_19311965149..1965547 [-], 399189184838hypothetical protein 
32OTT_19321965569..1966297 [-], 729189184839hypothetical protein 
33OTT_19331966664..1966963 [+], 300189184840N6 adenine-specific DNA-methyltransferase 
34OTT_19341967373..1968248 [-], 876189184841transposase 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]