SecReT4
T4SS ID561
StrainOrientia tsutsugamushi str. Ikeda
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_010793
Location1847799..1871543
NameTra_F
FunctionNA
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number011111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number000101110
ComponentTraY_FTrbC_FOrf169_F
Number010

The information of T4SS components from NC_010793
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_18121843889..1844155 [+], 267189184719integrase 
2OTT_18131845397..1845678 [+], 282189184720transposase 
3OTT_18141846220..1847338 [+], 1119189184721integrase 
4OTT_18151847464..1847799 [+], 336189184722hypothetical protein 
5OTT_18161847799..1848350 [+], 552189184723conjugative transfer protein TraE  TraE_F
6OTT_18171848347..1848823 [+], 477189184724hypothetical protein 
7OTT_18181849188..1849523 [+], 336189184725hypothetical protein 
8OTT_18191849577..1850911 [+], 1335189184726conjugative transfer protein TraB  TraB_F
9OTT_18201850911..1851204 [+], 294189184727hypothetical protein  TraV_F
10OTT_18211851185..1853674 [+], 2490189184728conjugative transfer protein TraC  TraC_F
11OTT_18221853671..1854330 [+], 660189184729conjugative transfer protein TraW  TraW_F
12OTT_18231854416..1854619 [+], 204189184730hypothetical protein 
13OTT_18241854623..1855600 [+], 978189184731conjugative transfer protein TraU  TraU_F
14OTT_18251855623..1856006 [+], 384189184732conjugative transfer protein TrbC  TrbC_F
15OTT_18261856003..1857697 [+], 1695189184733conjugative transfer protein TraN  TraN_F
16OTT_18271857694..1858398 [+], 705189184734conjugative transfer protein TraF  TraF_F
17OTT_18281858395..1859288 [+], 894189184735conjugative transfer protein TraH  TraH_F
18OTT_18291859218..1859697 [+], 480189184736conjugative transfer protein TraH 
19OTT_18301859697..1862324 [+], 2628189184737conjugative transfer protein TraG  TraG_F
20OTT_18311862337..1863476 [+], 1140189184738TPR repeat-containing protein 01_10 
21OTT_18321863476..1865230 [+], 1755189184739conjugative transfer protein TraD  TraD_F
22OTT_18331865232..1866251 [-], 1020189184740transposase 
23OTT_18341866236..1868908 [-], 2673189184741conjugative transfer protein TraI 
24OTT_18351869177..1871543 [-], 2367189184742conjugative transfer protein TraA  TraI_F
25OTT_18361871607..1872005 [-], 399189184743conjugative transfer protein TraA 
26OTT_18371872300..1872755 [+], 456189184744conjugative transfer protein TraD 
27OTT_18381872823..1873737 [-], 915189184745hypothetical protein 
28OTT_18391873948..1874454 [-], 507189184746transposase 
29OTT_18401874596..1874784 [-], 189189184747transposase 
30OTT_18411875085..1875672 [+], 588189184748transposase 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]