SecReT4
T4SS ID565
StrainOrientia tsutsugamushi str. Ikeda
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_010793
Location502015..511838
NameTra_F
FunctionNA
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number011011110
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number000101100
ComponentTraY_FTrbC_FOrf169_F
Number010

The information of T4SS components from NC_010793
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1OTT_0475498155..499177 [+], 1023189183382integrase 
2OTT_0476499717..500019 [-], 303189183383hypothetical protein 
3OTT_0477500003..501142 [+], 1140189183384reverse transcriptase 
4OTT_0478501636..501785 [+], 150189183385hypothetical protein 
5OTT_0479501785..501928 [+], 144189183386conjugative transfer protein TraE 
6OTT_0480502015..502338 [+], 324189183387conjugative transfer protein TraE  TraE_F
7OTT_0481502335..502637 [+], 303189183388hypothetical protein 
8OTT_0482502637..502741 [+], 105189183389hypothetical protein 
9OTT_0483502841..503080 [+], 240189183390conjugative transfer protein TraB 
10OTT_0484503043..503312 [+], 270189183391conjugative transfer protein TraB  TraB_F
11OTT_0485503312..503641 [+], 330189183392hypothetical protein  TraV_F
12OTT_0486503622..505409 [+], 1788189183393conjugative transfer protein TraC  TraC_F
13OTT_0487505323..506360 [-], 1038189183394ankyrin repeat-containing protein 05_03 
14OTT_0488506728..507411 [+], 684189183395conjugative transfer protein TraU  TraU_F
15OTT_0489507496..507816 [+], 321189183396conjugative transfer protein TrbC  TrbC_F
16OTT_0490507813..508253 [+], 441189183397conjugative transfer protein TraN 
17OTT_0491508304..509503 [+], 1200189183398conjugative transfer protein TraN  TraN_F
18OTT_0492509500..510126 [+], 627189183399conjugative transfer protein TraF  TraF_F
19OTT_0493510202..511503 [+], 1302189183400conjugative transfer protein TraH  TraH_F
20OTT_0494511503..511838 [+], 336189183401conjugative transfer protein TraG  TraG_F
21OTT_0495512009..512977 [+], 969189183402transposase 
22OTT_0496512993..513583 [-], 591189183403integrase 
23OTT_0497514551..515081 [+], 531189183404hypothetical protein 
24OTT_0498515568..515780 [+], 213189183405transposase 
25OTT_0499516167..516367 [+], 201189183406transposase 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]