SecReT4
T4SS ID575
StrainEscherichia coli APEC O1
Repliconplasmid pAPEC-O1-R [Browse all T4SS(s) in this replicon]
AccessionNC_009838
Location1998..11636; 31511..40294; 159533..177838
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_009838
Region 1: 1998..11636
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1APECO1_O1R1 (repA)1..876 [+], 876157412015hypothetical protein 
2APECO1_O1R2 (htdZ)1998..2378 [+], 381157412016HtdZ  TraA_F
3APECO1_O1R3 (trhL)2396..2746 [+], 351157412017TrhL  TraL_F
4APECO1_O1R4 (trhE)2758..3546 [+], 789157412018TrhE  TraE_F
5APECO1_O1R5 (trhK)3543..4817 [+], 1275157412019TrhK  TraK_F
6APECO1_O1R6 (htdO)4819..5280 [+], 462157412020HtdO 
7APECO1_O1R7 (trhB)5258..6625 [+], 1368157412021hypothetical protein  TraB_F
8APECO1_O1R8 (htdV)6633..7115 [+], 483157412022HtdV 
9APECO1_O1R9 (htdT)7006..7986 [+], 981157412023HtdT 
10APECO1_O1R10 (trhV)7996..8946 [+], 951157412024TrhV  TraV_F
11APECO1_O1R11 (trhC)8955..11636 [+], 2682157412025TrhC  TraC_F
 
Region 2: 31511..40294
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1APECO1_O1R26 (trhF)31012..31524 [+], 513157412039TrhF 
2APECO1_O1R27 (trhW)31511..33022 [+], 1512157412040TrhW  TraW_F
3APECO1_O1R28 (trhU)33062..34222 [+], 1161157412041TrhU  TraU_F
4APECO1_O1R29 (trhN)34241..37429 [+], 3189157412042conjugal transfer mating pair stabilization protein TraN  TraN_F
5APECO1_O1R3037458..38330 [-], 873157412043hypothetical protein 
6APECO1_O1R31 (trhI)38510..40294 [+], 1785157412044TrhI  TraI_F
7APECO1_O1R3240689..41561 [+], 873157412045hypothetical protein 
8APECO1_O1R3341619..41996 [+], 378157412046hypothetical protein 
9APECO1_O1R3442057..43034 [+], 978157412047hypothetical protein 
10APECO1_O1R3543092..44150 [+], 1059157412048putative ATP-binding protein 
 
Region 3: 159533..177838
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1APECO1_O1R136 (mucB)154871..156130 [+], 1260157412151UV protection and repair protein 
2APECO1_O1R137156176..156985 [-], 810157412152hypothetical protein 
3APECO1_O1R138157092..157703 [+], 612157412153hypothetical protein 
4APECO1_O1R139157763..158185 [-], 423157412154hypothetical protein 
5APECO1_O1R140158219..158617 [-], 399157412155hypothetical protein 
6APECO1_O1R141 (dsbC)158636..159385 [-], 750157412156DsbC 
7APECO1_O1R142159533..160072 [+], 540157412157putative pilin biogenesis protein  Orf169_F
8APECO1_O1R143160203..160721 [+], 519157412158hypothetical protein 
9APECO1_O1R144160829..162118 [-], 1290157412159hypothetical protein 
10APECO1_O1R145 (trhG)162299..166252 [-], 3954157412160inner membrane protein  TraG_F
11APECO1_O1R146 (trhH)166261..167739 [-], 1479157412161pilus assembly protein  TraH_F
12APECO1_O1R147 (trhF)167666..168712 [-], 1047157412162pilus assembly protein  TraF_F
13APECO1_O1R148 (trhY)169306..169818 [-], 513157412163plasmid transfer protein 
14APECO1_O1R149 (trhR)169820..170620 [-], 801157412164plasmid transfer protein 
15APECO1_O1R150 (traH)171379..171864 [+], 486157412165plasmid transfer protein 
16APECO1_O1R151171861..172598 [+], 738157412166hypothetical protein 
17APECO1_O1R152 (traI)172602..175754 [+], 3153157412167hypothetical protein 
18APECO1_O1R153 (traG)175754..177838 [+], 2085157412168hypothetical protein  TraD_F
19APECO1_O1R154177838..178947 [+], 1110157412169hypothetical protein 
20APECO1_O1R155 (traJ)178916..179596 [+], 681157412170hypothetical protein 
21APECO1_O1R156179607..180788 [+], 1182157412171hypothetical protein 
22APECO1_O1R157180790..181521 [+], 732157412172hypothetical protein 
23APECO1_O1R158181808..182170 [-], 363157412173hypothetical protein 
24APECO1_O1R159182227..182511 [-], 285157412174hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Johnson TJ; Wannemeuhler YM; Scaccianoce JA; Johnson SJ; Nolan LK (2006). Complete DNA sequence, comparative genomics, and prevalence of an IncHI2 plasmid occurring among extraintestinal pathogenic Escherichia coli isolates. Antimicrob Agents Chemother. 50(11):3929-33. [PudMed:16940062]