SecReT4
T4SS ID577
StrainSerratia marcescens plasmid R478 (NC_005211)
Repliconplasmid R478 [Browse all T4SS(s) in this replicon]
AccessionNC_005211
Location2025..11636; 29556..38339; 179083..197621
NameTra_F
FunctionNA
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_005211
Region 1: 2025..11636
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1SMR0001 (repHIA)1..876 [+], 87638347831putative rep protein 
2SMR0004 (trhA)2025..2378 [+], 35438347832putative pilin  TraA_F
3SMR0005 (trhL)2396..2746 [+], 35138347833putative plasmid transfer protein  TraL_F
4SMR0006 (trhE)2758..3546 [+], 78938347834putative pilus assembly protein  TraE_F
5SMR0007 (trhK)3546..4817 [+], 127238347835hypothetical protein  TraK_F
6SMR0008 (htdO)4819..5280 [+], 46238347836hypothetical protein 
7SMR0009 (trhB)5270..6625 [+], 135638347837putative transfer protein  TraB_F
8SMR0010 (htdV)6633..7115 [+], 48338347838hypothetical protein 
9SMR0011 (htdT)7129..7986 [+], 85838347839putative plasmid transfer protein 
10SMR0012 (trhV)7996..8946 [+], 95138347840putative plasmid transfer protein  TraV_F
11SMR0013 (trhC)8955..11636 [+], 268238347841putative pilus assembly protein  TraC_F
 
Region 2: 29556..38339
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1SMR0026 (trhF)29057..29569 [+], 51338347854putative signal peptidase I 
2SMR0027 (trhW)29556..31067 [+], 151238347855plasmid exported transfer protein  TraW_F
3SMR0028 (trhU)31206..32267 [+], 106238347856plasmid exported transfer protein  TraU_F
4SMR0029 (trhN)32286..35474 [+], 318938347857conjugal transfer mating pair stabilization protein TraN  TraN_F
5SMR003035503..36375 [-], 87338347858lipoprotein 
6SMR0031 (trhI)36555..38339 [+], 178538347859putative DNA helicase  TraI_F
7SMR003438734..39606 [+], 87338347860hypothetical protein 
8SMR003539664..40041 [+], 37838347861hypothetical protein 
9SMR003640102..41079 [+], 97838347862hypothetical protein 
10SMR003741137..42195 [+], 105938347863putative ATP-binding protein 
11SMR003842327..42500 [+], 17438347864hypothetical protein 
 
Region 3: 179083..197621
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1SMR0193 (mucB)174427..175680 [+], 125438348013putative UV protection and repair protein 
2SMR0194175726..176535 [-], 81038348014hypothetical protein 
3SMR0195176642..177253 [+], 61238348015lipoprotein 
4SMR0196177313..177735 [-], 42338348016hypothetical protein 
5SMR0197177769..178161 [-], 39338348017hypothetical protein 
6SMR0198 (dsbC)178186..178935 [-], 75038348018thiol:disulfide interchange protein 
7SMR0199179083..179622 [+], 54038348019putative pilin biogenesis protein  Orf169_F
8SMR0200179705..180262 [+], 55838348020hypothetical protein 
9SMR0201180386..181447 [+], 106238348021hypothetical protein 
10SMR0202181457..181963 [+], 50738348022hypothetical protein 
11SMR0203 (trhG)182086..186036 [-], 395138348023putative inner membrane protein  TraG_F
12SMR0204 (trhH)186045..187460 [-], 141638348024putative pilus assembly protein  TraH_F
13SMR0205 (trhF)187450..188496 [-], 104738348025hypothetical protein  TraF_F
14SMR0206 (trhY)189088..189600 [-], 51338348026hypothetical protein 
15SMR0207 (trhR)189602..190402 [-], 80138348027hypothetical protein 
16SMR0208190950..191111 [+], 16238348028hypothetical protein 
17SMR0209 (traH)191162..191647 [+], 48638348029hypothetical protein 
18SMR0210191644..192381 [+], 73838348030hypothetical protein 
19SMR0211 (traI)192385..195537 [+], 315338348031hypothetical protein 
20SMR0212 (traG)195537..197621 [+], 208538348032membrane protein  TraD_F
21SMR0213197618..198730 [+], 111338348033hypothetical protein 
22SMR0214 (traJ)198717..199379 [+], 66338348034putative inner membrane protein 
23SMR0215199390..200571 [+], 118238348035putative peptidase 
24SMR0216200573..201304 [+], 73238348036exported protein 
25SMR0217201591..201944 [-], 35438348037hypothetical protein 
26SMR0218202010..202294 [-], 28538348038putative inner membrane protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gilmour MW; Thomson NR; Sanders M; Parkhill J; Taylor DE (2004). The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid. 52(3):182-202. [PudMed:15518875]