SecReT4
T4SS ID578
StrainSalmonella enterica subsp. enterica serovar Typhi str. CT18
Repliconplasmid pHCM1 [Browse all T4SS(s) in this replicon]
AccessionNC_003384
Location44356..53929; 71193..84072; 190873..207765
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_003384
Region 1: 44356..53929
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1HCM1.61c39594..40301 [-], 70818466478hypothetical protein 
2HCM1.62c40298..40498 [-], 20118466479hypothetical protein 
3HCM1.63c40516..41592 [-], 107718466480hypothetical protein 
4HCM1.64 (repA2)42127..43002 [+], 87618466481replication initiation protein 
5HCM1.67 (trhA)44356..44709 [+], 35418466482pilin precursor  TraA_F
6HCM1.69 (trhL)44728..45078 [+], 35118466483plasmid transfer protein  TraL_F
7HCM1.70 (trhE)45078..45875 [+], 79818466484pilus assembly protein  TraE_F
8HCM1.7145878..47110 [+], 123318466485periplasmic protein  TraK_F
9HCM1.7247112..47552 [+], 44118466486hypothetical protein 
10HCM1.73 (trhB)47542..48900 [+], 135918466487plasmid transfer protein  TraB_F
11HCM1.7448909..49421 [+], 51318466488hypothetical protein 
12HCM1.7549422..50279 [+], 85818466489plasmid transfer protein 
13HCM1.76 (trhV)50289..51239 [+], 95118466490plasmid transfer protein  TraV_F
14HCM1.77 (trhC)51248..53929 [+], 268218466491plasmid transfer protein  TraC_F
15HCM1.8656742..57995 [+], 125418466492plasmid partition protein 
 
Region 2: 71193..84072
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1HCM1.98 (trhF)70694..71206 [+], 51318466504pilin maturation protein 
2HCM1.99 (trhW)71193..72701 [+], 150918466505plasmid transfer protein  TraW_F
3HCM1.100 (trhU)72891..73898 [+], 100818466506plasmid transfer protein  TraU_F
4HCM1.101 (trhN)73921..77097 [+], 317718466507conjugal transfer protein TraN  TraN_F
5HCM1.10277433..78419 [+], 98718466508hypothetical protein 
6HCM1.10378416..80455 [+], 204018466509DNA helicase 
7HCM1.104c80458..80712 [-], 25518466510hypothetical protein 
8HCM1.106c81234..82106 [-], 87318466511lipoprotein 
9HCM1.107 (trhI)82288..84072 [+], 178532765047DNA helicase  TraI_F
10HCM1.10884470..85345 [+], 87618466513hypothetical protein 
11HCM1.10985404..85781 [+], 37818466514hypothetical protein 
12HCM1.11085842..86828 [+], 98718466515hypothetical protein 
13HCM1.11186888..87940 [+], 105318466516hypothetical protein 
14HCM1.11287979..88248 [+], 27018466517hypothetical protein 
 
Region 3: 190873..207765
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1HCM1.253 (mucB)186216..187475 [+], 126018466631DNA-repair modulator 
2HCM1.254c187527..188336 [-], 81018466632outer membrane protein 
3HCM1.255188443..189054 [+], 61218466633lipoprotein 
4HCM1.256c189113..189535 [-], 42318466634hypothetical protein 
5HCM1.257c189558..189950 [-], 39318466635periplasmic protein 
6HCM1.258c189976..190725 [-], 75018466636thiol:disulfide interchange protein 
7HCM1.259190873..191388 [+], 51618466637hypothetical protein  Orf169_F
8HCM1.261191440..192003 [+], 56418466638hypothetical protein 
9HCM1.262192297..196286 [-], 399018466639hypothetical protein  TraG_F
10HCM1.263c196295..197710 [-], 141618466640pilus assembly protein  TraH_F
11HCM1.264c197700..198746 [-], 104718466641pilus assembly protein  TraF_F
12HCM1.266c199358..199870 [-], 51318466642hypothetical protein 
13HCM1.268c199873..200673 [-], 80118466643hypothetical protein 
14HCM1.269201431..201916 [+], 48618466644hypothetical protein 
15HCM1.270201913..202635 [+], 72318466645hypothetical protein 
16HCM1.271202646..205681 [+], 303618466646hypothetical protein 
17HCM1.272205783..207765 [+], 198332765051hypothetical protein  TraD_F
18HCM1.273207762..208868 [+], 110718466648hypothetical protein 
19HCM1.275208855..209517 [+], 66318466649hypothetical protein 
20HCM1.276209530..210711 [+], 118218466650peptidase 
21HCM1.277210728..211441 [+], 71418466651periplasmic protein 
22HCM1.278c211468..211824 [-], 35718466652hypothetical protein 
23HCM1.279c211911..212225 [-], 31518466653hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Parkhill J; Dougan G; James KD; Thomson NR; Pickard D; Wain J; Churcher C; Mungall KL; Bentley SD; Holden MT; Sebaihia M; Baker S; Basham D; Brooks K; Chillingworth T; Connerton P; Cronin A; Davis P; Davies RM; Dowd L; White N; Farrar J; Feltwell T; Hamlin N; Haque A; Hien TT; Holroyd S; Jagels K; Krogh A; Larsen TS; Leather S; Moule S; O'Gaora P; Parry C; Quail M; Rutherford K; Simmonds M; Skelton J; Stevens K; Whitehead S; Barrell BG (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature. 413(6858):848-52. [PudMed:11677608]