SecReT4
T4SS ID580
StrainAeromonas hydrophila plasmid pRA1 (NC_012885)
Repliconplasmid pRA1 [Browse all T4SS(s) in this replicon]
AccessionNC_012885
Location43775..71839; 131026..140667
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
experimental Experimental investigation has been performed on this T4SS.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_012885
Region 1: 43775..71839
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pRA1_005639720..40136 [+], 417242347993hypothetical protein 
2pRA1_005740586..42775 [-], 2190242347994DNA topoisomerase 3 (DNA topoisomerase III) 
3pRA1_005842990..43607 [-], 618242347995hypothetical protein 
4pRA1_0059 (traI)43775..46738 [+], 2964242347996type IV secretion-like conjugative relaxase TraI  TraI_F
5pRA1_0060 (traD)46735..48600 [+], 1866242347997type IV secretion-like conjugation coupling factor TraD  TraD_F
6pRA1_006148611..49195 [+], 585242347998hypothetical protein 
7pRA1_006249152..49781 [+], 630242347999putative type IV secretion-like conjugation coupling factor 
8pRA1_006349792..50238 [+], 447242348000hypothetical protein 
9pRA1_006450248..50625 [+], 378242348001hypothetical protein 
10pRA1_006550625..51287 [+], 663242348002hypothetical protein 
11pRA1_006651622..51969 [+], 348242348003hypothetical protein 
12pRA1_0067 (traL)52112..52393 [+], 282242348004type IV secretion-like conjugative transfer system protein TraL  TraL_F
13pRA1_0068 (traE)52390..53016 [+], 627242348005type IV secretion-like conjugative transfer sex pilus assembly protein TraE  TraE_F
14pRA1_006953000..53917 [+], 918242348006hypothetical protein  TraK_F
15pRA1_0070 (traB)53914..55230 [+], 1317242348007type IV secretion-like conjugative transfer sex pilus assembly protein TraB  TraB_F
16pRA1_0071 (traV)55227..55805 [+], 579242348008type IV secretion-like conjugative transfer system protein TraV  TraV_F
17pRA1_0072 (traA)55809..56201 [+], 393242348009type IV secretion-like conjugative transfer pilin subunit TraA  TraA_F
18pRA1_007356402..61888 [+], 5487242348010hypothetical protein 
19pRA1_007462037..62744 [+], 708242348011hypothetical protein 
20pRA1_0075 (traC)62741..65188 [+], 2448242348012type IV secretion-like conjugative transfer system protein TraC  TraC_F
21pRA1_007665203..65520 [+], 318242348013hypothetical protein 
22pRA1_007765517..66047 [+], 531242348014type IV secretion-like conjugative signal peptidase 
23pRA1_0078 (traW)66010..67278 [+], 1269242348015type IV secretion-like conjugative transfer sex pilus assembly protein TraW  TraW_F
24pRA1_007967275..67952 [+], 678242348016cyclic diguanylate phosphodiesterase (EAL) domain protein 
25pRA1_0080 (traU)67946..68950 [+], 1005242348017type IV secretion-like conjugative transfer sex pilus assembly protein TraU  TraU_F
26pRA1_0081 (traN)69101..71839 [+], 2739242348018conjugal transfer mating pair stabilization protein TraN  TraN_F
27pRA1_008271878..72738 [-], 861242348019hypothetical protein 
28pRA1_008372850..73500 [-], 651242348020hypothetical protein 
29pRA1_008473791..74111 [+], 321242348021hypothetical protein 
30pRA1_008574422..74607 [+], 186242348022hypothetical protein 
31pRA1_008674828..75796 [+], 969242348023ATPase, AAA family 
32pRA1_008775808..76713 [+], 906242348024hypothetical protein 
 
Region 2: 131026..140667
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pRA1_0143 (tus)127046..127921 [+], 876242348080DNA replication terminus site-binding protein 
2pRA1_0144128077..129117 [+], 1041242348081hypothetical protein 
3pRA1_0145129117..129395 [+], 279242348082hypothetical protein 
4pRA1_0146129404..130915 [+], 1512242348083hypothetical protein 
5pRA1_0147 (traF)131026..132066 [+], 1041242348084type IV secretion-like conjugative transfer system protein TraF  TraF_F
6pRA1_0148 (traH)132068..133501 [+], 1434242348085type IV secretion-like conjugative transfer system protein TraH  TraH_F
7pRA1_0149 (traG)133514..137119 [+], 3606242348086type IV secretion-like conjugative transfer sex pilus assembly protein TraG  TraG_F
8pRA1_0150137157..137519 [-], 363242348087hypothetical protein 
9pRA1_0151138095..139357 [+], 1263242348088ISEcp1 transposase 
10pRA1_0152139862..140134 [+], 273242348089Ner-like DNA-binding protein 
11pRA1_0153140134..140667 [+], 534242348090transglycosylase SLT domain protein  Orf169_F
12pRA1_0154140678..141286 [+], 609242348091hypothetical protein 
13pRA1_0155141283..141837 [+], 555242348092hypothetical protein 
14pRA1_0156141894..142313 [-], 420242348093hypothetical protein 
15pRA1_0157142315..142608 [-], 294242348094hypothetical protein 
16pRA1_0158142625..143608 [-], 984242348095hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Fricke WF; Welch TJ; McDermott PF; Mammel MK; LeClerc JE; White DG; Cebula TA; Ravel J (2009). Comparative genomics of the IncA/C multidrug resistance plasmid family. J Bacteriol. 191(15):4750-7. [PudMed:19482926] experimental
 
experimental This literature contains experimental investigation