SecReT4
T4SS ID583
StrainVibrio cholerae MJ-1236
Repliconchromosome 1 [Browse all T4SS(s) in this replicon]
AccessionNC_012668
Location2962770..2970574; 2988974..3018443
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_012668
Region 1: 2962770..2970574
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1VCD_003660 (prfC)2958347..2959936 [-], 1590229608738peptide chain release factor 3 
2VCD_0036612960193..2960840 [-], 648229608739HTH-type transcriptional regulator for conjugative element SXT 
3VCD_0036622960958..2961209 [+], 252229608740hypothetical protein 
4VCD_0036632961265..2962134 [+], 870229608741hypothetical protein 
5VCD_0036642962055..2962783 [+], 729229608742hypothetical protein 
6VCD_0036652962770..2963318 [+], 549229608743soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)  Orf169_F
7VCD_0036662963315..2963614 [+], 300229608744hypothetical protein 
8VCD_0036672964666..2968235 [-], 3570229608745IncF plasmid conjugative transfer protein TraG  TraG_F
9VCD_0036682968239..2969627 [-], 1389229608746IncF plasmid conjugative transfer pilus assembly protein TraH  TraH_F
10VCD_0036692969630..2970574 [-], 945229608747IncF plasmid conjugative transfer pilus assembly protein TraF  TraF_F
11VCD_0036702970831..2971790 [-], 960229608748integron integrase 
12VCD_0036712972078..2972551 [+], 474229608749dihydrofolate reductase 
13VCD_0036722973754..2974122 [+], 369229608750hypothetical protein 
14VCD_0036732974222..2974923 [+], 702229608751hypothetical protein 
 
Region 2: 2988974..3018443
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1VCD_0036842984772..2984915 [-], 144229608762hypothetical protein 
2VCD_0036852984997..2985815 [-], 819229608763hypothetical protein 
3VCD_0036862985895..2986314 [-], 420229608764single-stranded DNA-binding protein 
4VCD_0036872986330..2986668 [-], 339229608765hypothetical protein 
5VCD_0036882987024..2987626 [+], 603229608766hypothetical protein 
6VCD_0036892987717..2988379 [-], 663229608767hypothetical protein 
7VCD_0036902988410..2988883 [-], 474229608768hypothetical protein 
8VCD_0036912988974..2992615 [-], 3642229608769IncF plasmid conjugative transfer protein TraN  TraN_F
9VCD_0036922992669..2993703 [-], 1035229608770IncF plasmid conjugative transfer pilus assembly protein TraU  TraU_F
10VCD_0036932993681..2994844 [-], 1164229608771hypothetical protein  TraW_F
11VCD_0036942994816..2995328 [-], 513229608772signal peptidase I 
12VCD_0036952995312..2995659 [-], 348229608773hypothetical protein 
13VCD_0036962995652..2998069 [-], 2418229608774IncF plasmid conjugative transfer pilus assembly protein TraC  TraC_F
14VCD_0036972998051..2998743 [-], 693229608775thiol:disulfide interchange protein DsbC 
15VCD_0036982998888..3000333 [-], 1446229608776type 4 fimbriae expression regulatory protein pilR 
16VCD_0036993000336..3001871 [-], 1536229608777hypothetical protein 
17VCD_0037003001881..3002990 [-], 1110229608778hypothetical protein 
18VCD_0037013002987..3005716 [-], 2730229608779hypothetical protein 
19VCD_0037023006281..3007231 [-], 951229608780Ync 
20VCD_0037033007212..3008045 [-], 834229608781Ynd 
21VCD_0037043008223..3008609 [-], 387229608782TraA  TraA_F
22VCD_0037053008606..3009256 [-], 651229608783conjugative transfer protein TraV  TraV_F
23VCD_0037063009253..3010545 [-], 1293229608784IncF plasmid conjugative transfer pilus assembly protein TraB  TraB_F
24VCD_0037073010542..3011444 [-], 903229608785IncF plasmid conjugative transfer pilus assembly protein TraK  TraK_F
25VCD_0037083011425..3012051 [-], 627229608786hypothetical protein  TraE_F
26VCD_0037093012048..3012335 [-], 288229608787IncF plasmid conjugative transfer pilus assembly protein TraL  TraL_F
27VCD_0037103012585..3013205 [+], 621229608788hypothetical protein 
28VCD_0037113013232..3013876 [-], 645229608789conjugative transfer protein s043 
29VCD_0037123013854..3014390 [-], 537229608790hypothetical protein 
30VCD_0037133014424..3016244 [-], 1821229608791TraD  TraD_F
31VCD_0037143016293..3018443 [-], 2151229608792TraI  TraI_F
32VCD_0037153018598..3021249 [-], 2652229608793hypothetical protein 
33VCD_0037163021293..3023368 [-], 2076229608794hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEVchBan9 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216]