SecReT4
T4SS ID587
StrainYersinia ruckeri plasmid pYR1 (NC_009139)
Repliconplasmid pYR1 [Browse all T4SS(s) in this replicon]
AccessionNC_009139
Location49823..77989; 146831..154920
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
experimental Experimental investigation has been performed on this T4SS.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_009139
Region 1: 49823..77989
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1YR71pYR1_006844941..45225 [+], 285134044586hypothetical protein 
2YR71pYR1_006945332..46099 [+], 768134044630putative lipoprotein 
3YR71pYR1_007046128..46616 [-], 489134044573hypothetical protein 
4YR71pYR1_0071 (topB)46631..48823 [-], 2193134044502DNA topoisomerase III 
5YR71pYR1_007249038..49655 [-], 618134044621putative lipoprotein 
6YR71pYR1_0073 (traI)49823..52801 [+], 2979134044609type IV conjugative transfer system protein TraI  TraI_F
7YR71pYR1_0074 (traD)52798..54663 [+], 1866134044512type IV conjugative transfer system protein TraD  TraD_F
8YR71pYR1_007554674..55258 [+], 585134044476hypothetical protein 
9YR71pYR1_007655215..55844 [+], 630134044577putative type IV conjugative transfer system coupling factor 
10YR71pYR1_007755854..56300 [+], 447134044510hypothetical protein 
11YR71pYR1_007856310..56687 [+], 378134044509hypothetical protein 
12YR71pYR1_007956687..57349 [+], 663134044542hypothetical protein 
13YR71pYR1_008057685..58050 [+], 366134044631hypothetical protein 
14YR71pYR1_0081 (traL)58195..58476 [+], 282134044637type IV conjugative transfer system protein TraL  TraL_F
15YR71pYR1_0082 (traE)58473..59099 [+], 627134044523type IV conjugative transfer system protein TraE  TraE_F
16YR71pYR1_008359185..60000 [+], 816134044634hypothetical protein  TraK_F
17YR71pYR1_0084 (traB)59997..61313 [+], 1317134044613type IV conjugative transfer system protein TraB  TraB_F
18YR71pYR1_0085 (traV)61310..61888 [+], 579134044619type IV conjugative transfer system protein TraV  TraV_F
19YR71pYR1_0086 (traA)61901..62284 [+], 384134044575type IV conjugative transfer system protein TraA  TraA_F
20YR71pYR1_008762485..68016 [+], 5532134044632hypothetical protein 
21YR71pYR1_008868165..68872 [+], 708134044540hypothetical protein 
22YR71pYR1_0089 (traC)68869..71316 [+], 2448134044488type IV conjugative transfer system protein TraC  TraC_F
23YR71pYR1_009071331..71648 [+], 318134044526hypothetical protein 
24YR71pYR1_009171645..72175 [+], 531134044521type IV conjugative transfer system signal peptidase 
25YR71pYR1_0092 (traW)72138..73403 [+], 1266134044622type IV conjugative transfer system protein TraW  TraW_F
26YR71pYR1_009373400..74071 [+], 672134044500cyclic diguanylate phosphodiesterase domain-containing protein 
27YR71pYR1_0094 (traU)74068..75075 [+], 1008134044633type IV conjugative transfer system protein TraU  TraU_F
28YR71pYR1_0095 (traN)75191..77989 [+], 2799134044505conjugal transfer mating pair stabilization protein TraN  TraN_F
29YR71pYR1_009678028..78888 [-], 861134044602hypothetical protein 
30YR71pYR1_009779011..79652 [-], 642134044467hypothetical protein 
31YR71pYR1_009879946..80266 [+], 321134044583hypothetical protein 
32YR71pYR1_009980570..80755 [+], 186134044561hypothetical protein 
33YR71pYR1_010080975..81943 [+], 969134044568AAA family ATPase 
34YR71pYR1_010181954..82862 [+], 909134044484hypothetical protein 
 
Region 2: 146831..154920
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1YR71pYR1_0170142034..142525 [+], 492134044618hypothetical protein 
2YR71pYR1_0171142842..143717 [+], 876134044600DNA replication terminus site-binding protein 
3YR71pYR1_0172143870..144910 [+], 1041134044491hypothetical protein 
4YR71pYR1_0173144910..145188 [+], 279134044486hypothetical protein 
5YR71pYR1_0174145197..146708 [+], 1512134044543hypothetical protein 
6YR71pYR1_0175 (traF)146831..147859 [+], 1029134044606type IV conjugative transfer system protein TraF  TraF_F
7YR71pYR1_0176 (traH)147940..149373 [+], 1434134044544type IV conjugative transfer system protein TraH  TraH_F
8YR71pYR1_0177 (traG)149386..153000 [+], 3615134044454type IV conjugative transfer system protein TraG  TraG_F
9YR71pYR1_0178153037..153399 [-], 363134044587hypothetical protein 
10YR71pYR1_0179154115..154387 [+], 273134044489Ner-like DNA-binding protein 
11YR71pYR1_0180154387..154920 [+], 534134044579transglycosylase SLT domain-containing protein  Orf169_F
12YR71pYR1_0181154931..155539 [+], 609134044459hypothetical protein 
13YR71pYR1_0182155536..156087 [+], 552134044623hypothetical protein 
14YR71pYR1_0183156148..156567 [-], 420134044456hypothetical protein 
15YR71pYR1_0184156569..156862 [-], 294134044563hypothetical protein 
16YR71pYR1_0185156879..157862 [-], 984134044554hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Welch TJ; Fricke WF; McDermott PF; White DG; Rosso ML; Rasko DA; Mammel MK; Eppinger M; Rosovitz MJ; Wagner D; Rahalison L; Leclerc JE; Hinshaw JM; Lindler LE; Cebula TA; Carniel E; Ravel J (2007). Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One. 2(3):e309. [PudMed:17375195]