SecReT4
T4SS ID588
StrainShewanella sp. W3-18-1
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_008750
Location1248113..1258339; 1288318..1297395; 1323458..1331262
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
experimental Experimental investigation has been performed on this T4SS.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_008750
Region 1: 1248113..1258339
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Sputw3181_10921243711..1244262 [+], 552120597922hypothetical protein 
2Sputw3181_10931244391..1244564 [+], 174120597923hypothetical protein 
3Sputw3181_10941244566..1244934 [+], 369120597924membrane-bound metal-dependent hydrolase 
4Sputw3181_10951244944..1246098 [+], 1155120597925hypothetical protein 
5Sputw3181_10961246091..1247281 [+], 1191120597926hypothetical protein 
6Sputw3181_10971247282..1247995 [+], 714120597927hypothetical protein 
7Sputw3181_10981248113..1250263 [+], 2151120597928metal dependent phosphohydrolase  TraI_F
8Sputw3181_10991250312..1252135 [+], 1824120597929hypothetical protein  TraD_F
9Sputw3181_11001252145..1252705 [+], 561120597930hypothetical protein 
10Sputw3181_11011252692..1253327 [+], 636120597931hypothetical protein 
11Sputw3181_11021253354..1253941 [-], 588120597932hypothetical protein 
12Sputw3181_11031253955..1254194 [-], 240120597933hypothetical protein 
13Sputw3181_11041254230..1254511 [+], 282120597934hypothetical protein  TraL_F
14Sputw3181_11051254508..1255134 [+], 627120597935hypothetical protein  TraE_F
15Sputw3181_11061255115..1256014 [+], 900120597936hypothetical protein  TraK_F
16Sputw3181_11071256017..1257306 [+], 1290120597937TraB pilus assembly family protein  TraB_F
17Sputw3181_11081257303..1257953 [+], 651120597938hypothetical protein  TraV_F
18Sputw3181_11091257950..1258339 [+], 390120597939hypothetical protein  TraA_F
19Sputw3181_11101258748..1261243 [+], 2496120597940heavy metal translocating P-type ATPase 
20Sputw3181_11111261269..1261733 [+], 465120597941MerR family transcriptional regulator 
 
Region 2: 1288318..1297395
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Sputw3181_11351285681..1285902 [+], 222120597959hydrophobe/amphiphile efflux protein 
2Sputw3181_11361286021..1286191 [+], 171120597960putative copper chaperone 
3Sputw3181_11381287161..1287415 [+], 255120597961hypothetical protein 
4Sputw3181_11391287626..1288318 [+], 693120597962hypothetical protein 
5Sputw3181_11401288318..1290717 [+], 2400120597963sex pilus assembly protein  TraC_F
6Sputw3181_11411290710..1291057 [+], 348120597964hypothetical protein 
7Sputw3181_11421291041..1291553 [+], 513120597965hypothetical protein 
8Sputw3181_11431291564..1292688 [+], 1125120597966hypothetical protein  TraW_F
9Sputw3181_11441292672..1293700 [+], 1029120597967TraU family protein  TraU_F
10Sputw3181_11451293703..1297395 [+], 3693120597968mating pair stabilisation TraN  TraN_F
11Sputw3181_11461297637..1297885 [+], 249120597969hypothetical protein 
12Sputw3181_11471297895..1300168 [+], 2274120597970hypothetical protein 
13Sputw3181_11481300188..1300706 [+], 519120597971hypothetical protein 
14Sputw3181_11491300765..1301439 [-], 675120597972deoxyribonuclease I 
15Sputw3181_11501301548..1302150 [-], 603120597973hypothetical protein 
 
Region 3: 1323458..1331262
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Sputw3181_11671318659..1319903 [-], 1245120597990outer membrane efflux protein 
2Sputw3181_11681319955..1320320 [-], 366120597991hypothetical protein 
3Sputw3181_11691320363..1321268 [-], 906120597992cation efflux system permease 
4Sputw3181_11701321291..1321755 [+], 465120597993MerR family transcriptional regulator 
5Sputw3181_11711321777..1322694 [+], 918120597994cation diffusion facilitator family transporter 
6Sputw3181_11721322696..1323022 [+], 327120597995hypothetical protein 
7Sputw3181_11731323458..1324402 [+], 945120597996sex pilus assembly protein  TraF_F
8Sputw3181_11741324405..1325793 [+], 1389120597997TraH family protein  TraH_F
9Sputw3181_11751325797..1329366 [+], 3570120597998TraG domain-containing protein  TraG_F
10Sputw3181_11761329399..1329830 [-], 432120597999hypothetical protein 
11Sputw3181_11771329888..1330421 [-], 534120598000hypothetical protein 
12Sputw3181_11781330418..1330717 [-], 300120598001hypothetical protein 
13Sputw3181_11791330714..1331262 [-], 549120598002lytic transglycosylase, catalytic  Orf169_F
14Sputw3181_11801331249..1331911 [-], 663120598003hypothetical protein 
15Sputw3181_11811331898..1332767 [-], 870120598004hypothetical protein 
16Sputw3181_11821332823..1333074 [-], 252120598005hypothetical protein 
17Sputw3181_11831333192..1333839 [+], 648120598006putative prophage repressor 
18Sputw3181_1184 (prfC)1334096..1335682 [+], 1587120598007peptide chain release factor 3 
19Sputw3181_11851335765..1335950 [+], 186120598008hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICESpuPO1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Pembroke JT; Piterina AV (2006). A novel ICE in the genome of Shewanella putrefaciens W3-18-1: comparison with the SXT/R391 ICE-like elements. FEMS Microbiol Lett. 264(1):80-8. [PudMed:17020552]