SecReT4
T4SS ID589
StrainPhotobacterium damselae subsp. piscicida plasmid pP91278 (NC_008613)
Repliconplasmid pP91278 [Browse all T4SS(s) in this replicon]
AccessionNC_008613
Location27312..55478; 100711..108734
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_008613
Region 1: 27312..55478
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1P91278ORF_03622397..23014 [+], 618118601934hypothetical protein 
2P91278ORF_03723226..23525 [+], 300118601935hypothetical protein 
3P91278ORF_03823617..24105 [-], 489118601936hypothetical protein 
4P91278ORF_03924120..26312 [-], 2193118601937DNA topoisomerase III 
5P91278ORF_04026312..26473 [-], 162118601938hypothetical protein 
6P91278ORF_04126527..27159 [-], 633118601939hypothetical protein 
7P91278ORF_04227312..30290 [+], 2979118601940conjugative relaxase  TraI_F
8P91278ORF_04330293..32152 [+], 1860118601941conjugative coupling factor  TraD_F
9P91278ORF_04432163..32747 [+], 585118601942hypothetical protein 
10P91278ORF_04532704..33333 [+], 630118601943putative conjugation coupling factor 
11P91278ORF_04633343..33789 [+], 447118601944hypothetical protein 
12P91278ORF_04733799..34176 [+], 378118601945hypothetical protein 
13P91278ORF_04834176..34838 [+], 663118601946hypothetical protein 
14P91278ORF_04935162..35539 [+], 378118601947hypothetical protein 
15P91278ORF_05035684..35965 [+], 282118601948hypothetical protein  TraL_F
16P91278ORF_05135962..36588 [+], 627118601949sex pilus assembly protein  TraE_F
17P91278ORF_05236572..37489 [+], 918118601950hypothetical protein  TraK_F
18P91278ORF_05337486..38802 [+], 1317118601951hypothetical protein  TraB_F
19P91278ORF_05438799..39377 [+], 579118601952sex pilus assembly protein  TraV_F
20P91278ORF_05539390..39773 [+], 384118601953hypothetical protein  TraA_F
21P91278ORF_05639962..45505 [+], 5544118601954hypothetical protein 
22P91278ORF_05745654..46361 [+], 708118601955DsbC 
23P91278ORF_05846358..48805 [+], 2448118601956hypothetical protein  TraC_F
24P91278ORF_05948820..49137 [+], 318118601957hypothetical protein 
25P91278ORF_06049134..49664 [+], 531118601958TrhF 
26P91278ORF_06149675..50892 [+], 1218118601959pilus assembly protein  TraW_F
27P91278ORF_06250889..51560 [+], 672118601960hypothetical protein 
28P91278ORF_06351557..52564 [+], 1008118601961hypothetical protein  TraU_F
29P91278ORF_06452668..55478 [+], 2811118601962conjugal transfer mating pair stabilization protein TraN  TraN_F
30P91278ORF_06555517..56377 [-], 861118601963hypothetical protein 
31P91278ORF_06656500..57141 [-], 642118601964hypothetical protein 
32P91278ORF_06757435..57755 [+], 321118601965hypothetical protein 
33P91278ORF_06857993..58244 [+], 252118601966hypothetical protein 
34P91278ORF_06958464..59432 [+], 969118601967hypothetical protein 
35P91278ORF_07059443..60351 [+], 909118601968hypothetical protein 
 
Region 2: 100711..108734
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1P91278ORF_11495916..96407 [+], 492118602012hypothetical protein 
2P91278ORF_11596734..97609 [+], 876118602013DNA replication terminus site-binding protein 
3P91278ORF_11697762..98802 [+], 1041118602014KfrA protein 
4P91278ORF_11798802..99080 [+], 279118602015hypothetical protein 
5P91278ORF_11899089..100600 [+], 1512118602016putative DNA helicase 
6P91278ORF_119100711..101751 [+], 1041118602017hypothetical protein  TraF_F
7P91278ORF_120101753..103186 [+], 1434118602018putative pilus assembly protein  TraH_F
8P91278ORF_121103199..106813 [+], 3615118602019putative pilus assembly protein  TraG_F
9P91278ORF_122106851..107213 [-], 363118602020hypothetical protein 
10P91278ORF_123107929..108201 [+], 273118602021Ner-like protein 
11P91278ORF_124108201..108734 [+], 534118602022hypothetical protein  Orf169_F
12P91278ORF_125108745..109353 [+], 609118602023hypothetical protein 
13P91278ORF_126109350..109901 [+], 552118602024putative regulator protein 
14P91278ORF_127109961..110380 [-], 420118602025DNA binding protein, H-NS-like' 
15P91278ORF_128110382..110675 [-], 294118602026hypothetical protein 
16P91278ORF_129110692..111675 [-], 984118602027hypothetical protein 
17P91278ORF_130112174..112713 [+], 540118602028hypothetical protein 
18P91278ORF_131112718..113005 [+], 288118602029hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Kim MJ; Hirono I; Kurokawa K; Maki T; Hawke J; Kondo H; Santos MD; Aoki T (2008). Complete DNA sequence and analysis of the transferable multiple-drug resistance plasmids (R Plasmids) from Photobacterium damselae subsp. piscicida isolates collected in Japan and the United States. Antimicrob Agents Chemother. 52(2):606-11. [PudMed:18070959]