SecReT4
T4SS ID590
StrainPhotobacterium damselae subsp. piscicida plasmid pP99-018 (NC_008612)
Repliconplasmid pP99-018 [Browse all T4SS(s) in this replicon]
AccessionNC_008612
Location32858..61024; 106276..114299
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_008612
Region 1: 32858..61024
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1P99018ORF_04427943..28560 [+], 618118614672hypothetical protein 
2P99018ORF_04528772..29071 [+], 300118614673hypothetical protein 
3P99018ORF_04629163..29651 [-], 489118614674hypothetical protein 
4P99018ORF_04729666..31858 [-], 2193118614675DNA topoisomerase III 
5P99018ORF_04831858..32019 [-], 162118614676hypothetical protein 
6P99018ORF_04932073..32705 [-], 633118614677hypothetical protein 
7P99018ORF_05032858..35836 [+], 2979118614678conjugative relaxase  TraI_F
8P99018ORF_05135839..37698 [+], 1860118614679conjugative coupling factor  TraD_F
9P99018ORF_05237709..38293 [+], 585118614680hypothetical protein 
10P99018ORF_05338250..38879 [+], 630118614681putative conjugation coupling factor 
11P99018ORF_05438889..39335 [+], 447118614682hypothetical protein 
12P99018ORF_05539345..39722 [+], 378118614683hypothetical protein 
13P99018ORF_05639722..40384 [+], 663118614684hypothetical protein 
14P99018ORF_05740708..41085 [+], 378118614685hypothetical protein 
15P99018ORF_05841230..41511 [+], 282118614686sex pilus assembly protein  TraL_F
16P99018ORF_05941508..42134 [+], 627118614687sex pilus aseembly protein  TraE_F
17P99018ORF_06042118..43035 [+], 918118614688hypothetical protein  TraK_F
18P99018ORF_06143032..44348 [+], 1317118614689sex pilus assembly protein  TraB_F
19P99018ORF_06244345..44923 [+], 579118614690sex pilus assmbly protein  TraV_F
20P99018ORF_06344936..45319 [+], 384118614691hypothetical protein  TraA_F
21P99018ORF_06445508..51051 [+], 5544118614692hypothetical protein 
22P99018ORF_06551200..51907 [+], 708118614693sidufide bond isomerase 
23P99018ORF_06651904..54351 [+], 2448118614694sex pilus assembly protein  TraC_F
24P99018ORF_06754366..54683 [+], 318118614695hypothetical protein 
25P99018ORF_06854680..55210 [+], 531118614696conjugation signal peptide 
26P99018ORF_06955221..56438 [+], 1218118614697pilus assembly protein  TraW_F
27P99018ORF_07056435..57106 [+], 672118614698hypothrtical protien 
28P99018ORF_07157103..58110 [+], 1008118614699sex pilus assembly protein  TraU_F
29P99018ORF_07258214..61024 [+], 2811118614700conjugal transfer mating pair stabilization protein TraN  TraN_F
30P99018ORF_07361063..61923 [-], 861118614701hypothetical protein 
31P99018ORF_07462046..62687 [-], 642118614702hypothetical protein 
32P99018ORF_07562981..63301 [+], 321118614703hypothetical protein 
33P99018ORF_07663539..63790 [+], 252118614704hypothetical protein 
34P99018ORF_07764010..64978 [+], 969118614705hypothetical protein 
35P99018ORF_07864989..65897 [+], 909118614706hypothetical protein 
 
Region 2: 106276..114299
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1P99018ORF_122101462..101953 [+], 492118614750hypothetical protein 
2P99018ORF_123102280..103155 [+], 876118614751DNA replication terminus site-binding protein 
3P99018ORF_124103326..104126 [+], 801118614752KfrA protein 
4P99018ORF_125104056..104367 [+], 312118614753hypothetical protein 
5P99018ORF_126104654..106165 [+], 1512118614754putative DNA helicase 
6P99018ORF_127106276..107316 [+], 1041118614755sex pilus assembly  TraF_F
7P99018ORF_128107318..108751 [+], 1434118614756putative pilus assembly protein  TraH_F
8P99018ORF_129108764..112378 [+], 3615118614757putative pilus assembly protein  TraG_F
9P99018ORF_130112416..112778 [-], 363118614758hypothetical protein 
10P99018ORF_131113494..113766 [+], 273118614759Ner-like protein 
11P99018ORF_132113766..114299 [+], 534118614760hypothetical protein  Orf169_F
12P99018ORF_133114310..114918 [+], 609118614761hypothetical protein 
13P99018ORF_134114915..115466 [+], 552118614762putative regulator protein 
14P99018ORF_135115526..115945 [-], 420118614763DNA binding protein, H-NS-like protein 
15P99018ORF_136115947..116240 [-], 294118614764hypothetical protein 
16P99018ORF_137116257..117240 [-], 984118614765hypothetical protein 
17P99018ORF_138117739..118278 [+], 540118614766hypothetical protein 
18P99018ORF_139118283..118570 [+], 288118614767hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Kim MJ; Hirono I; Kurokawa K; Maki T; Hawke J; Kondo H; Santos MD; Aoki T (2008). Complete DNA sequence and analysis of the transferable multiple-drug resistance plasmids (R Plasmids) from Photobacterium damselae subsp. piscicida isolates collected in Japan and the United States. Antimicrob Agents Chemother. 52(2):606-11. [PudMed:18070959]