SecReT4
T4SS ID650
StrainClostridiales genomosp. BVAB3 str. UPII9-5
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_013895
Location539356..550020
NameTra_Tn
Functionconjugation
ClassificationType IVD; Type GP
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentOrf13_TnOrf14_TnOrf15_TnOrf16_TnOrf17_TnOrf19_TnOrf21_Tn
Number1112111

The information of T4SS components from NC_013895
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1HMPREF0868_1220534550..535209 [+], 660289449912single-strand binding family protein 
2HMPREF0868_1219535352..535558 [+], 207289449650DNA-binding helix-turn-helix protein 
3HMPREF0868_1218535649..536674 [+], 1026289450092hypothetical protein 
4HMPREF0868_1217536674..537564 [+], 891308513230hypothetical protein 
5HMPREF0868_1216537568..538287 [+], 720308513231hypothetical protein 
6HMPREF0868_1215538611..538925 [+], 315289450078hypothetical protein 
7HMPREF0868_1214538941..539327 [+], 387289450342hypothetical protein 
8HMPREF0868_1213539356..540741 [+], 1386289449505FtsK/SpoIIIE family protein  Orf21_Tn
9HMPREF0868_1212540919..542124 [+], 1206289450523DNA-binding helix-turn-helix protein 
10HMPREF0868_1211542167..542388 [+], 222289450419hypothetical protein  Orf19_Tn
11HMPREF0868_1210 (ardA)542505..542999 [+], 495289450397antirestriction protein 
12HMPREF0868_1209542974..543480 [+], 507289449595hypothetical protein  Orf17_Tn
13HMPREF0868_1208543464..544579 [+], 1116308513232hypothetical protein  Orf16_Tn
14HMPREF0868_1207544576..545910 [+], 1335308513233ATP/GTP-binding family protein  Orf16_Tn
15HMPREF0868_1206545913..548090 [+], 2178289450131hypothetical protein  Orf15_Tn
16HMPREF0868_1205548087..549088 [+], 1002289450607NlpC/P60 family protein  Orf14_Tn
17HMPREF0868_1204549103..550020 [+], 918289449915hypothetical protein  Orf13_Tn
18HMPREF0868_1203550265..550381 [+], 117289449655tetracycline resistance determinant leader peptide 
19HMPREF0868_1202550397..552316 [+], 1920289449644putative translation elongation factor G 
20HMPREF0868_1201552662..553015 [-], 354289450382DNA-binding helix-turn-helix protein 
21HMPREF0868_1200553520..553942 [+], 423289450801sigma-70, region 4 
22HMPREF0868_1199554233..554361 [-], 129289449933hypothetical protein 
23HMPREF0868_1198554630..554833 [+], 204289449399DNA binding domain-containing protein, excisionase family 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICECloUPII95-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation