SecReT4
T4SS ID668
StrainClostridium difficile 630
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009089
Location586451..599749
NameTra_Tn
Functionconjugation
ClassificationType IVD; Type GP
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentOrf13_TnOrf14_TnOrf15_TnOrf16_TnOrf17_TnOrf19_TnOrf21_Tn
Number1011111

The information of T4SS components from NC_009089
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1CD630_04910581655..582062 [+], 408126698068PTS system mannose/fructose/sorbose transporter subunit IIA 
2CD630_04920582091..582564 [+], 474126698069PTS system mannose/fructose/sorbose transporter subunit IIB 
3CD630_04930582611..583369 [+], 759126698070PTS system mannose/fructose/sorbose transporter subunit IIC 
4CD630_04940583393..584232 [+], 840126698071PTS system mannose/fructose/sorbose transporter subunit IID 
5CD630_04960585695..586009 [+], 315126698072conjugative transposon protein 
6CD630_04970586031..586417 [+], 387126698073conjugative transposon protein 
7CD630_04980586451..587836 [+], 1386126698074cell-division FtsK/SpoIIIE-family protein Tn5397, CTn3-Orf21  Orf21_Tn
8CD630_04981587839..587991 [+], 153126698075conjugative transposon protein 
9CD630_04990588010..589218 [+], 1209126698076replication initiation factor 
10CD630_04991589261..589482 [+], 222126698077conjugative transposon protein  Orf19_Tn
11CD630_05000589599..590096 [+], 498126698078antirestriction protein 
12CD630_05010590184..590576 [+], 393126698079conjugative transposon protein  Orf17_Tn
13CD630_05020590560..593007 [+], 2448126698080ATPase  Orf16_Tn
14CD630_05030593007..595175 [+], 2169126698081membrane protein  Orf15_Tn
15CD630_05060596830..598659 [+], 1830126698083Reverse transcriptase/maturase/endonuclease,Group II intron 
16CD630_05070598817..599749 [+], 933126698084conjugative transposon protein  Orf13_Tn
17CD630_05080 (tetM)600034..601953 [+], 1920126698086Tetracycline resistance protein Tn5397 
18CD630_05081602049..602243 [+], 195400927276conjugative transposon protein 
19CD630_05090602302..602655 [-], 354126698088HTH-type transcriptional regulator 
20CD630_05091602866..602931 [+], 66126698089conjugative transposon protein 
21CD630_05100603157..603582 [+], 426126698090RNA polymerase sigma factor 
22CD630_05101603579..603809 [+], 231126698091conjugative transposon protein 
23CD630_05103604190..604330 [+], 141400927277conjugative transposon protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) Tn5397 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PudMed:16804543]