SecReT4
T4SS ID683
StrainXanthomonas campestris pv. campestris str. 8004
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_007086
Location2439093..2459267
NameTfc
Functionconjugation
ClassificationType IVC; Type G
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTfc1Tfc2Tfc3Tfc4Tfc5Tfc6Tfc7Tfc8Tfc9
Number011111011
ComponentTfc10Tfc11Tfc12Tfc13Tfc14Tfc15Tfc16Tfc17Tfc18
Number011111100
ComponentTfc19Tfc20Tfc21Tfc22Tfc23Tfc24
Number100111

The information of T4SS components from NC_007086
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1XC_20202435115..2437043 [-], 192966768339hypothetical protein 
2XC_20212437359..2437985 [+], 62766768340hypothetical protein 
3XC_20222437998..2438630 [+], 63366768341hypothetical protein 
4XC_20232438716..2439081 [+], 36666768342hypothetical protein 
5XC_20242439093..2440613 [-], 152166768343hypothetical protein  Tfc19
6XC_20252440629..2440976 [-], 34866768344hypothetical protein 
7XC_20262440973..2442367 [-], 139566768345hypothetical protein  Tfc22
8XC_20272442378..2443343 [-], 96666768346hypothetical protein  Tfc23
9XC_20282443340..2443786 [-], 44766768347hypothetical protein  Tfc24
10XC_20292443947..2444441 [-], 49566768348DNA repair protein RadC 
11XC_20302444626..2445390 [-], 76566768349hypothetical protein 
12XC_20312445406..2448270 [-], 286566768350Type IV secretory pathway, VirB4 components  Tfc16
13XC_20322448270..2448713 [-], 44466768351hypothetical protein  Tfc15
14XC_20332448694..2450124 [-], 143166768352hypothetical protein  Tfc14
15XC_20342450114..2451040 [-], 92777761186hypothetical protein  Tfc13
16XC_20352451037..2451726 [-], 69066768354hypothetical protein  Tfc12
17XC_20362451723..2452133 [-], 41166768355hypothetical protein  Tfc11
18XC_20372452144..2452461 [-], 31866768356hypothetical protein 
19XC_20382452750..2453130 [-], 38166768357hypothetical protein  Tfc9
20XC_20392453229..2453978 [-], 75066768358hypothetical protein  Tfc8
21XC_20402453975..2456164 [-], 219066768359VirD4, Type IV secretory pathway, VirD4 components  Tfc6
22XC_20412456169..2456717 [-], 54966768360hypothetical protein  Tfc5
23XC_20422456714..2457295 [-], 58266768361hypothetical protein  Tfc4
24XC_20432457301..2458023 [-], 72366768362hypothetical protein  Tfc3
25XC_20442458039..2458686 [-], 64866768363hypothetical protein 
26XC_20452458683..2459267 [-], 58566768364hypothetical protein  Tfc2
27XC_20462459407..2461713 [-], 230766768365plasmid-like protein 
28XC_20472461828..2462163 [-], 33666768366hypothetical protein 
29XC_20482462222..2462404 [-], 18366768367hypothetical protein 
30XC_20492462586..2463695 [-], 111066768368plasmid-like protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEXcaCa8004-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation