SecReT4
T4SS ID684
StrainXanthomonas campestris pv. vesicatoria str. 85-10
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_007508
Location2689317..2709471
NameTfc
Functionconjugation
ClassificationType IVC; Type G
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTfc1Tfc2Tfc3Tfc4Tfc5Tfc6Tfc7Tfc8Tfc9
Number011111011
ComponentTfc10Tfc11Tfc12Tfc13Tfc14Tfc15Tfc16Tfc17Tfc18
Number011111100
ComponentTfc19Tfc20Tfc21Tfc22Tfc23Tfc24
Number100111

The information of T4SS components from NC_007508
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1XCV23552684884..2685381 [+], 49878047911hypothetical protein 
2XCV23562685446..2687278 [-], 183378047912hypothetical protein 
3XCV23572687592..2688218 [+], 62778047913hypothetical protein 
4XCV23582688231..2688848 [+], 61878047914hypothetical protein 
5XCV23592688948..2689310 [+], 36378047915hypothetical protein 
6XCV23602689317..2690840 [-], 152478047916hypothetical protein  Tfc19
7XCV23612690855..2691226 [-], 37278047917hypothetical protein 
8XCV23622691223..2692620 [-], 139878047918hypothetical protein  Tfc22
9XCV23632692630..2693577 [-], 94878047919hypothetical protein  Tfc23
10XCV23642693574..2694020 [-], 44778047920hypothetical protein  Tfc24
11XCV23652694183..2694677 [-], 49578047921RadC family DNA repair protein 
12XCV23662694859..2695644 [-], 78678047922hypothetical protein 
13XCV23672695658..2698525 [-], 286878047923hypothetical protein  Tfc16
14XCV23682698525..2698965 [-], 44178047924hypothetical protein  Tfc15
15XCV23692698946..2700376 [-], 143178047925hypothetical protein  Tfc14
16XCV23702700366..2701280 [-], 91578047926hypothetical protein  Tfc13
17XCV23712701277..2701969 [-], 69378047927hypothetical protein  Tfc12
18XCV23722701966..2702364 [-], 39978047928hypothetical protein  Tfc11
19XCV23732702377..2702733 [-], 35778047929hypothetical protein 
20XCV23742702751..2702984 [-], 23478047930hypothetical protein 
21XCV23752702981..2703361 [-], 38178047931hypothetical protein  Tfc9
22XCV23762703460..2704209 [-], 75078047932hypothetical protein  Tfc8
23XCV23772704206..2706398 [-], 219378047933hypothetical protein  Tfc6
24XCV23782706403..2706942 [-], 54078047934hypothetical protein  Tfc5
25XCV23792706939..2707529 [-], 59178047935lytic transglycosylase precursor  Tfc4
26XCV23802707511..2708236 [-], 72678047936hypothetical protein  Tfc3
27XCV23812708249..2708818 [-], 57078047937hypothetical protein 
28XCV23822708872..2709471 [-], 60078047938hypothetical protein  Tfc2
29XCV23832709660..2710748 [-], 108978047939hypothetical protein 
30XCV23842710765..2712960 [-], 219678047940cytochrome precursor 
31XCV23852713288..2713974 [-], 68778047941hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEXcaVe85-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation