SecReT4
T4SS ID685
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_009708
Location4172940..4212300
NameTfc
Functionconjugation
ClassificationType IVC; Type G
insolico This T4SS is identified in this study.

T4SS components
ComponentTfc1Tfc2Tfc3Tfc4Tfc5Tfc6Tfc7Tfc8Tfc9
Number011111011
ComponentTfc10Tfc11Tfc12Tfc13Tfc14Tfc15Tfc16Tfc17Tfc18
Number011111100
ComponentTfc19Tfc20Tfc21Tfc22Tfc23Tfc24
Number110111

The information of T4SS components from NC_009708
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1YpsIP31758_36934167963..4168580 [+], 618153947511hypothetical protein 
2YpsIP31758_36944168820..4169257 [+], 438153948822hypothetical protein 
3YpsIP31758_36954169387..4169941 [+], 555153948105hypothetical protein 
4YpsIP31758_36964170053..4170577 [+], 525153950625hypothetical protein 
5YpsIP31758_36974170921..4171811 [-], 891153950034hypothetical protein 
6YpsIP31758_36984172940..4173236 [+], 297153949915hypothetical protein  Tfc20
7YpsIP31758_36994173268..4174791 [-], 1524153949553hypothetical protein  Tfc19
8YpsIP31758_37004174791..4176197 [-], 1407153948995hypothetical protein  Tfc22
9YpsIP31758_37014176218..4177171 [-], 954153948703hypothetical protein  Tfc23
10YpsIP31758_37024177168..4177572 [-], 405153948810hypothetical protein  Tfc24
11YpsIP31758_37034178309..4180441 [+], 2133153948344hypothetical protein 
12YpsIP31758_37044181327..4182028 [+], 702153947653lipoprotein 
13YpsIP31758_37054182460..4185306 [-], 2847153947175hypothetical protein  Tfc16
14YpsIP31758_37064185306..4185707 [-], 402153950384lipoprotein  Tfc15
15YpsIP31758_37074185720..4187237 [-], 1518153950424hypothetical protein  Tfc14
16YpsIP31758_37084187234..4188100 [-], 867153947339hypothetical protein  Tfc13
17YpsIP31758_37094188097..4188750 [-], 654153947855hypothetical protein  Tfc12
18YpsIP31758_37104188747..4189121 [-], 375153948305hypothetical protein  Tfc11
19YpsIP31758_37114189131..4189481 [-], 351153948689hypothetical protein 
20YpsIP31758_37124189497..4189742 [-], 246153950890hypothetical protein 
21YpsIP31758_37134189742..4190050 [-], 309153947204hypothetical protein  Tfc9
22YpsIP31758_37144190571..4191458 [-], 888153948073hypothetical protein 
23YpsIP31758_37154191576..4193381 [-], 1806153949528hypothetical protein 
24YpsIP31758_37164193378..4194616 [-], 1239153949095hypothetical protein 
25YpsIP31758_37174194737..4195489 [-], 753153949810hypothetical protein  Tfc8
26YpsIP31758_37184195489..4197609 [-], 2121153949357hypothetical protein  Tfc6
27YpsIP31758_37194197668..4198189 [-], 522153948477hypothetical protein  Tfc5
28YpsIP31758_37204198186..4198824 [-], 639153947897transglycosylase  Tfc4
29YpsIP31758_37214198803..4199621 [-], 819153946967hypothetical protein  Tfc3
30YpsIP31758_37224199713..4200045 [-], 333153950462hypothetical protein 
31YpsIP31758_37234200035..4200241 [-], 207153950657hypothetical protein 
32YpsIP31758_37244200453..4200809 [+], 357153949547DNA binding protein 
33YpsIP31758_37254200871..4201002 [+], 132153948289hypothetical protein 
34YpsIP31758_37264201125..4202057 [-], 933153948767transposase 
35YpsIP31758_37274202151..4203428 [-], 1278153950112shufflon protein 
36YpsIP31758_37284203432..4204100 [-], 669153950514type IV prepilin peptidase 
37YpsIP31758_3729 (pilS)4204097..4204684 [-], 588153950735type IV pilus biogenesis protein 
38YpsIP31758_3730 (pilR)4204699..4205799 [-], 1101153949596type IV pilus biogenesis protein PilR 
39YpsIP31758_37314205801..4207354 [-], 1554153949834type IV secretion system protein 
40YpsIP31758_3732 (pilP1)4207364..4207858 [-], 495153948141type IV pilus biogenesis protein PilP 
41YpsIP31758_37334207845..4209182 [-], 1338153948492pilin accessory protein PilO 
42YpsIP31758_37344209185..4210777 [-], 1593153947286type IVB pilus formation outer membrane protein 
43YpsIP31758_37354210791..4211228 [-], 438153948904PilM protein 
44YpsIP31758_37364211230..4212300 [-], 1071153949391pilus biogenesis protein  Tfc2
45YpsIP31758_37374212438..4212824 [-], 387153948160PilT domain-containing protein 
46YpsIP31758_37384212821..4213054 [-], 234153948738prevent-host-death family protein 
47YpsIP31758_37394213225..4213656 [-], 432153947251hypothetical protein 
48YpsIP31758_37404213859..4214401 [-], 543153947850hypothetical protein 
49YpsIP31758_37414214398..4214517 [-], 120153949142hypothetical protein 
50YpsIP31758_37424214702..4215460 [-], 759153949718hypothetical protein 
51YpsIP31758_37434215620..4216819 [-], 1200153949516hypothetical protein 
52YpsIP31758_37444217055..4217216 [-], 162153947878hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) YAPI(IP32777) and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
Identified as part of this study from NC_009708