SecReT4
T4SS ID705
StrainCupriavidus metallidurans CH34
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_007973
Location2545874..2573458
NameTfc
Functionconjugation
ClassificationType IVC; Type G
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTfc1Tfc2Tfc3Tfc4Tfc5Tfc6Tfc7Tfc8Tfc9
Number011111011
ComponentTfc10Tfc11Tfc12Tfc13Tfc14Tfc15Tfc16Tfc17Tfc18
Number011111100
ComponentTfc19Tfc20Tfc21Tfc22Tfc23Tfc24
Number100111

The information of T4SS components from NC_007973
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Rmet_23272541444..2542553 [+], 111094311263putative adenine-specific DNA methyltransferase 
2Rmet_23282542604..2542924 [+], 32194311264hypothetical protein 
3Rmet_23292543014..2543319 [+], 30694311265hypothetical protein 
4Rmet_23302543456..2545735 [+], 228094311266putative plasmid-related DNA/RNA helicase 
5Rmet_2331 (pilL)2545874..2546473 [+], 60094311267pilL lipoprotein (type IV pili)  Tfc2
6Rmet_23322546470..2547114 [+], 64594311268hypothetical protein 
7Rmet_23332547127..2547864 [+], 73894311269hypothetical protein  Tfc3
8Rmet_23342547846..2548436 [+], 59194311270putative lytic transglycosylase, catalytic  Tfc4
9Rmet_23352548433..2548981 [+], 54994311271hypothetical protein  Tfc5
10Rmet_2336 (virD4)2548986..2551175 [+], 219094311272VirD4, type IV secretory pathway, VirD4 components  Tfc6
11Rmet_23372551172..2551921 [+], 75094311273hypothetical protein  Tfc8
12Rmet_23382551962..2554586 [-], 262594311274hypothetical protein 
13Rmet_23392554596..2555321 [-], 72694311275hypothetical protein 
14Rmet_23402555360..2556262 [-], 90394311276hypothetical protein 
15Rmet_23412556262..2556915 [-], 65494311277hypothetical protein 
16Rmet_65232556759..2557229 [-], 471335055595hypothetical protein 
17Rmet_23422557226..2558140 [-], 91594311278putative AAA ATPase, central region 
18Rmet_23432558158..2558733 [-], 57694311279hypothetical protein 
19Rmet_23442558730..2559200 [-], 47194311280putative excisionase 
20Rmet_23452559404..2559787 [+], 38494311281hypothetical protein  Tfc9
21Rmet_23462559784..2560017 [+], 23494311282hypothetical protein 
22Rmet_23472560034..2560393 [+], 36094311283hypothetical protein 
23Rmet_23482560406..2560804 [+], 39994311284hypothetical protein  Tfc11
24Rmet_23492560801..2561493 [+], 69394311285hypothetical protein  Tfc12
25Rmet_23502561490..2562401 [+], 91294311286hypothetical protein  Tfc13
26Rmet_23512562391..2563809 [+], 141994311287hypothetical protein  Tfc14
27Rmet_23522563790..2564230 [+], 44194311288putative secreted protein  Tfc15
28Rmet_23532564230..2567121 [+], 289294311289type IV secretory pathway, VirB4 components  Tfc16
29Rmet_23542567146..2567910 [+], 76594311290hypothetical protein 
30Rmet_2355 (radC)2568086..2568580 [+], 49594311291DNA binding protein 
31Rmet_23562568745..2569191 [+], 44794311292hypothetical protein  Tfc24
32Rmet_23572569188..2570138 [+], 95194311293hypothetical protein  Tfc23
33Rmet_23582570148..2571542 [+], 139594311294hypothetical protein  Tfc22
34Rmet_23592571539..2571895 [+], 35794311295hypothetical protein 
35Rmet_23602571911..2573458 [+], 154894311296hypothetical protein  Tfc19
36Rmet_23612573474..2573833 [-], 36094311297hypothetical protein 
37Rmet_23622573907..2574539 [-], 63394311298hypothetical protein 
38Rmet_23632574552..2575178 [-], 62794311299hypothetical protein 
39Rmet_23642575344..2577386 [+], 204394311300relaxase 
40Rmet_23652577434..2578429 [-], 99694311301putative transcriptional regulator 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICECmeCH34-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation