SecReT4
T4SS ID708
StrainYersinia enterocolitica subsp. enterocolitica 8081
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_008800
Location3777818..3819146
NameTfc
Functionconjugation
ClassificationType IVC; Type G
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTfc1Tfc2Tfc3Tfc4Tfc5Tfc6Tfc7Tfc8Tfc9
Number011111011
ComponentTfc10Tfc11Tfc12Tfc13Tfc14Tfc15Tfc16Tfc17Tfc18
Number011111100
ComponentTfc19Tfc20Tfc21Tfc22Tfc23Tfc24
Number100111

The information of T4SS components from NC_008800
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1YE34623775095..3776192 [+], 1098123443652hypothetical protein 
2YE34633776189..3777172 [+], 984123443653hypothetical protein 
3YE34643777495..3777758 [+], 264123443654hypothetical protein 
4YE34653777818..3779338 [-], 1521123443655hypothetical protein  Tfc19
5YE34663779338..3780744 [-], 1407123443656hypothetical protein  Tfc22
6YE34673780765..3781718 [-], 954123443657hypothetical protein  Tfc23
7YE34683781715..3782068 [-], 354123443658hypothetical protein  Tfc24
8YE3472 (arsR2)3783946..3784299 [+], 354123443659DNA-binding transcriptional repressor ArsR 
9YE3472A (arsD)3784346..3784708 [+], 363123443660arsenical resistance operon trans-acting repressor 
10YE3473 (arsA2)3784726..3786477 [+], 1752123443661arsenical pump-driving ATPase 
11YE3474 (arsB2)3786526..3787815 [+], 1290123443662arsenical pump membrane protein 
12YE3475 (arsC2)3787828..3788253 [+], 426123443663arsenate reductase 
13YE3476 (tpn1330)3788299..3789492 [-], 1194123443664transposase for IS1330 
14YE3477 (arsH)3789694..3790404 [-], 711123443665putative arsenic resistance protein 
15YE34783790536..3790829 [-], 294123443666hypothetical protein 
16YE34793790936..3792069 [+], 1134123443667putative membrane transport protein 
17YE3480 (ccdB)3792208..3792522 [-], 315123443668cytotoxic protein 
18YE3481 (ccdA)3792525..3792761 [-], 237123443669gyrase inhibitor antitoxin 
19YE34823793238..3795880 [-], 2643123443670hypothetical protein  Tfc16
20YE34833796042..3796446 [-], 405123443671putative lipoprotein  Tfc15
21YE34843796456..3797913 [-], 1458123443672hypothetical protein  Tfc14
22YE34853797961..3798827 [-], 867123443673hypothetical protein  Tfc13
23YE34863798824..3799477 [-], 654123443674hypothetical protein  Tfc12
24YE34873799474..3799848 [-], 375123443675putative inner membrane protein  Tfc11
25YE34883799858..3800208 [-], 351123443676hypothetical protein 
26YE34893800224..3800472 [-], 249123443677hypothetical protein 
27YE34903800469..3800777 [-], 309123443678hypothetical protein  Tfc9
28YE34923801682..3802434 [-], 753123443679putative inner membrane protein  Tfc8
29YE34933802434..3804554 [-], 2121123443680TraG-family protein  Tfc6
30YE34943804740..3805234 [-], 495123443681hypothetical protein  Tfc5
31YE3494A3805258..3805806 [-], 549123443682hypothetical protein  Tfc4
32YE34953805875..3806642 [-], 768123443683hypothetical protein  Tfc3
33YE3495A3806785..3807132 [-], 348123443684hypothetical protein 
34YE34963807111..3807365 [-], 255123443685hypothetical protein 
35YE3496A3807520..3807876 [+], 357123443686putative DNA-binding protein 
36YE34973808031..3808951 [-], 921123443687putative transposase 
37YE34983809045..3810322 [-], 1278123443688putative type IV pilus protein 
38YE34993810326..3810994 [-], 669123443689type IV prepilin peptidase 
39YE35003810991..3811578 [-], 588123443690putative type IV prepilin 
40YE35013811593..3812702 [-], 1110123443691type IV pilus integral membrane protein 
41YE35023812695..3814248 [-], 1554123443692putative type IV pilus protein 
42YE3502A3814257..3814736 [-], 480123443693putative type IV pilus protein 
43YE35033814723..3816030 [-], 1308123443694putative type IV pilus protein 
44YE35043816033..3817721 [-], 1689123443695putative type IV pilus operon lipoprotein 
45YE35053817733..3818170 [-], 438123443696putative type IV pilus operon exported poprotein 
46YE35063818172..3819146 [-], 975123443697putative type IV pilus operon lipoprotein  Tfc2
47YE35073819341..3819772 [-], 432123443698hypothetical protein 
48YE35083819884..3820201 [-], 318123443699hypothetical protein 
49YE35093820501..3821043 [-], 543123443700hypothetical protein 
50YE35103821333..3822091 [-], 759123443701hypothetical protein 
51YE35113822260..3823462 [-], 1203123443702hypothetical protein 
52YE35123823568..3824137 [-], 570123443703hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) YAPI(ye) and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673] in_silico
 
in_silico This literature contains bioinformatics investigation