SecReT4
T4SS ID774
StrainRuegeria sp. TM1040
Repliconplasmid unnamed [Browse all T4SS(s) in this replicon]
AccessionNC_008042
Location43437..45443; 60669..71754
NameVirB
Functionconjugation
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number211111011
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_008042
Region 1: 43437..45443
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1TM1040_379139882..40088 [+], 20799077926hypothetical protein 
2TM1040_379240650..41243 [+], 59499077927hypothetical protein 
3TM1040_379341230..43440 [+], 221199077928relaxase/mobilization nuclease domain-containing protein 
4TM1040_379443437..45443 [+], 200799077929TRAG protein  VirD4
5TM1040_379545670..47667 [-], 199899077930periplasmic sensor signal transduction histidine kinase 
6TM1040_379647907..48452 [-], 54699077931hypothetical protein 
 
Region 2: 60669..71754
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1TM1040_380456206..56622 [+], 41799077939hypothetical protein 
2TM1040_380556625..57533 [+], 90999077940hypothetical protein 
3TM1040_380657539..58570 [+], 103299077941hypothetical protein 
4TM1040_380758658..59440 [+], 78399077942hypothetical protein 
5TM1040_380859718..60518 [+], 80199077943LuxR family transcriptional regulator 
6TM1040_380960669..61748 [-], 108099077944TrbL/VirB6 plasmid conjugal transfer protein  VirB6
7TM1040_381061761..62174 [-], 41499077945hypothetical protein 
8TM1040_381162171..62365 [-], 19599077946hypothetical protein 
9TM1040_381262362..63348 [-], 98799077947type II secretion system protein E  VirB11
10TM1040_381363353..64732 [-], 138099077948conjugation TrbI-like protein  VirB10
11TM1040_381464729..65424 [-], 69699077949conjugal transfer protein TrbG/VirB9/CagX  VirB9
12TM1040_381565427..66080 [-], 65499077950VirB8  VirB8
13TM1040_381666097..66906 [-], 81099077951hypothetical protein  VirB5
14TM1040_381766906..68060 [-], 115599077952lytic transglycosylase, catalytic  VirB1
15TM1040_381868050..68217 [-], 16899077953hypothetical protein 
16TM1040_381968214..70589 [-], 237699077954CagE, TrbE, VirB component of type IV transporter system  VirB4
17TM1040_382070579..70824 [-], 24699077955type IV secretory pathway, VirB3-like  VirB3
18TM1040_382170850..71143 [-], 29499077956VIRB2 type IV secretion  VirB2
19TM1040_382271140..71754 [-], 61599077957lytic transglycosylase, catalytic  VirB1
20TM1040_382371798..72151 [-], 35499077958hypothetical protein 
21TM1040_382472319..72615 [+], 29799077959hypothetical protein 
22TM1040_382572863..73168 [+], 30699077960hypothetical protein 
23TM1040_382673161..73388 [+], 22899077961hypothetical protein 
24TM1040_382773530..73781 [-], 25299077962hypothetical protein 
25TM1040_382873771..74475 [-], 70599077963short-chain dehydrogenase/reductase SDR 
26TM1040_382974574..75452 [+], 87999077964LysR family transcriptional regulator 
27TM1040_383075610..76341 [-], 73299077965hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
(1) Moran MA; Belas R; Schell MA; Gonzalez JM; Sun F; Sun S; Binder BJ; Edmonds J; Ye W; Orcutt B; Howard EC; Meile C; Palefsky W; Goesmann A; Ren Q; Paulsen I; Ulrich LE; Thompson LS; Saunders E; Buchan A (2007). Ecological genomics of marine Roseobacters. Appl Environ Microbiol. 73(14):4559-69. [PudMed:17526795] in_silico
 
in_silico This literature contains bioinformatics investigation