SecReT4
SecReT4 contains data from 925 references related to type IV secretion systems (T4SSs). Last Update: Aug 11, 2012

Categories (Literatures contain following contents are categorized)
reviews experimental studies bioinformatics genome sequencing T4SS component T4SS effectors
conjugation DNA uptake and release effector translocation structural study protein interaction other
all
Search
     

Number of references found for the 'bioinformatics' category : 69

References
(1) Souza RC, Quispe Saji GD, Costa MO, Netto DS, Lima NC, Klein CC, Vasconcelos AT, Nicolás MF (2012). AtlasT4SS: A curated database for type IV secretion systems. BMC Microbiol. 12(1):172. [PudMed:22876890]
(2) You Y et al (2012). Comparative Genomics of Helicobacter pylori Strains of China Associated with Different Clinical Outcome. PLoS One. 7(6):e38528. [PudMed:22701658]
(3) Guy L et al (2012). A genome-wide study of recombination rate variation in Bartonella henselae. BMC Evol Biol. 12(1):65. [PudMed:22577862]
(4) Dolezal P et al (2012). Legionella pneumophila secretes a mitochondrial carrier protein during infection. PLoS Pathog. 8(1):e1002459. [PudMed:22241989]
(5) Rizzato C et al (2012). Variations in Helicobacter pylori cytotoxin-associated genes and their influence in progression to gastric cancer: implications for prevention. PLoS One. 7(1):e29605. [PudMed:22235308]
(6) Gillespie JJ et al (2012). A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle. J Bacteriol. 194(2):376-94. [PudMed:22056929]
(7) Bi D et al (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]
(8) Lockwood S et al (2011). Identification of Anaplasma marginale type IV secretion system effector proteins. PLoS One. 6(11):e27724. [PudMed:22140462]
(9) Gomez-Valero L et al (2011). Comparative and functional genomics of legionella identified eukaryotic like proteins as key players in host-pathogen interactions. Front Microbiol. 2:208. [PudMed:22059087]
(10) Truttmann MC et al (2011). BID-F1 and BID-F2 domains of Bartonella henselae effector protein BepF trigger together with BepC the formation of invasome structures. PLoS One. 6(10):e25106. [PudMed:22043280]
(11) Jalan N et al (2011). Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity. J Bacteriol. 193(22):6342-57. [PudMed:21908674]
(12) Youssef NH et al (2011). Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma). Appl Environ Microbiol. 77(21):7804-14. [PudMed:21908640]
(13) Guglielmini J et al (2011). The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet. 7(8):e1002222. [PudMed:21876676]
(14) Baltrus DA et al (2011). Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog. 7(7):e1002132. [PudMed:21799664]
(15) Renvoise A et al (2011). Intracellular Rickettsiales: Insights into manipulators of eukaryotic cells. Trends Mol Med. 17(10):573-83. [PudMed:21763202]
(16) Nagai H et al (2011). Type IVB Secretion Systems of Legionella and Other Gram-Negative Bacteria. Front Microbiol. 2:136. [PudMed:21743810]
(17) Tan Y et al (2011). Legionella pneumophila SidD is a deAMPylase that modifies Rab1. Nature. 475(7357):506-9. [PudMed:21734656]
(18) Marchesini MI et al (2011). In search of Brucella abortus type IV secretion substrates: screening and identification of four proteins translocated into host cells through VirB system. Cell Microbiol. 13(8):1261-74. [PudMed:21707904]
(19) Collingro A et al (2011). Unity in variety--the pan-genome of the Chlamydiae. Mol Biol Evol. 28(12):3253-70. [PudMed:21690563]
(20) Carey KL et al (2011). The Coxiella burnetii Dot/Icm system delivers a unique repertoire of type IV effectors into host cells and is required for intracellular replication. PLoS Pathog. 7(5):e1002056. [PudMed:21637816]
(21) Ananiadou S et al (2011). Named entity recognition for bacterial Type IV secretion systems. PLoS One. 6(3):e14780. [PudMed:21468321]
(22) Ramirez-Diaz MI et al (2011). Nucleotide sequence of Pseudomonas aeruginosa conjugative plasmid pUM505 containing virulence and heavy-metal resistance genes. Plasmid. 66(1):7-18. [PudMed:21421005]
(23) Vermoote M et al (2011). Genome sequence of Helicobacter suis supports its role in gastric pathology. Vet Res. 42(1):51. [PudMed:21414191]
(24) Potnis N et al (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics. 12:146. [PudMed:21396108]
(25) Engel P et al (2011). Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella. PLoS Genet. 7(2):e1001296. [PudMed:21347280]
(26) Hervet E et al (2011). Protein kinase LegK2 is a type IV secretion system effector involved in endoplasmic reticulum recruitment and intracellular replication of Legionella pneumophila. Infect Immun. 79(5):1936-50. [PudMed:21321072]
(27) Hatakeyama M (2011). Anthropological and clinical implications for the structural diversity of the Helicobacter pylori CagA oncoprotein. Cancer Sci. 102(1):36-43. [PudMed:20942897]
(28) Olbermann P et al (2010). A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island. PLoS Genet. 6(8):e1001069. [PudMed:20808891]
(29) Remenant B et al (2010). Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. BMC Genomics. 11:379. [PudMed:20550686]
(30) Lurie-Weinberger MN et al (2010). The origins of eukaryotic-like proteins in Legionella pneumophila. Int J Med Microbiol. 300(7):470-81. [PudMed:20537944]
(31) Farnbacher M et al (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics. 11:335. [PudMed:20507619]
(32) Fischer W et al (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PudMed:20478826]
(33) Green S et al (2010). Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One. 5(4):e10224. [PudMed:20419105]
(34) Mane SP et al (2010). Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses. J Bacteriol. 192(12):3078-92. [PudMed:20400544]
(35) Moreira LM et al (2010). Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC Genomics. 11:238. [PudMed:20388224]
(36) Berglund EC et al (2010). Genome dynamics of Bartonella grahamii in micro-populations of woodland rodents. BMC Genomics. 11:152. [PudMed:20202191]
(37) Gillespie JJ et al (2010). Phylogenomics reveals a diverse Rickettsiales type IV secretion system. Infect Immun. 78(5):1809-23. [PudMed:20176788]
(38) Ryan MP et al (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]
(39) Burstein D et al (2009). Genome-scale identification of Legionella pneumophila effectors using a machine learning approach. PLoS Pathog. 5(7):e1000508. [PudMed:19593377]
(40) Duan Y et al (2009). Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol Plant Microbe Interact. 22(8):1011-20. [PudMed:19589076]
(41) Pichon S et al (2009). Conservation of the Type IV secretion system throughout Wolbachia evolution. Biochem Biophys Res Commun. 385(4):557-62. [PudMed:19486895]
(42) Champion MD et al (2009). Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathog. 5(5):e1000459. [PudMed:19478886]
(43) Turner JD et al (2009). Wolbachia lipoprotein stimulates innate and adaptive immunity through Toll-like receptors 2 and 6 to induce disease manifestations of filariasis. J Biol Chem. 284(33):22364-78. [PudMed:19458089]
(44) Degtyar E et al (2009). A Legionella effector acquired from protozoa is involved in sphingolipids metabolism and is targeted to the host cell mitochondria. Cell Microbiol. 11(8):1219-35. [PudMed:19438520]
(45) Wattam AR et al (2009). Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle. J Bacteriol. 191(11):3569-79. [PudMed:19346311]
(46) Gillespie JJ et al (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686]
(47) Van der Auwera G et al (2008). Transcriptional analysis of the conjugative plasmid pAW63 from Bacillus thuringiensis. Plasmid. 60(3):190-9. [PudMed:18761035]
(48) Chu C et al (2008). Evolution of genes on the Salmonella Virulence plasmid phylogeny revealed from sequencing of the virulence plasmids of S. enterica serotype Dublin and comparative analysis. Genomics. 92(5):339-43. [PudMed:18718522]
(49) Zusman T et al (2008). Identification of a hypervariable region containing new Legionella pneumophila Icm/Dot translocated substrates by using the conserved icmQ regulatory signature. Infect Immun. 76(10):4581-91. [PudMed:18694969]
(50) Pan X et al (2008). Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors. Science. 320(5883):1651-4. [PudMed:18566289]
(51) Lee KB et al (2008). The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics. 9:271. [PudMed:18522759]
(52) Alavi SM et al (2008). Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations. Appl Environ Microbiol. 74(10):3295-301. [PudMed:18359831]
(53) Cytryn EJ et al (2008). Insights learned from pBTAi1, a 229-kb accessory plasmid from Bradyrhizobium sp. strain BTAi1 and prevalence of accessory plasmids in other Bradyrhizobium sp. strains. ISME J. 2(2):158-70. [PudMed:18219284]
(54) Altman E et al (2008). The response regulator CpxR directly regulates expression of several Legionella pneumophila icm/dot components as well as new translocated substrates. J Bacteriol. 190(6):1985-96. [PudMed:18192394]
(55) Leclerque A et al (2008). Type IV secretion system components as phylogenetic markers of entomopathogenic bacteria of the genus Rickettsiella. FEMS Microbiol Lett. 279(2):167-73. [PudMed:18179586]
(56) Nystedt B et al (2008). Diversifying selection and concerted evolution of a type IV secretion system in Bartonella. Mol Biol Evol. 25(2):287-300. [PudMed:18065487]
(57) Juhas M et al (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PudMed:17996041]
(58) Alvi A et al (2007). Microevolution of Helicobacter pylori type IV secretion systems in an ulcer disease patient over a ten-year period. J Clin Microbiol. 45(12):4039-43. [PudMed:17942650]
(59) Moran MA et al (2007). Ecological genomics of marine Roseobacters. Appl Environ Microbiol. 73(14):4559-69. [PudMed:17526795]
(60) Medini D et al (2006). Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems. PLoS Comput Biol. 2(12):e173. [PudMed:17140285]
(61) Fernandez-Lopez R et al (2006). Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. FEMS Microbiol Rev. 30(6):942-66. [PudMed:17026718]
(62) Karnholz A et al (2006). Functional and topological characterization of novel components of the comB DNA transformation competence system in Helicobacter pylori. J Bacteriol. 188(3):882-93. [PudMed:16428391]
(63) de Felipe KS et al (2005). Evidence for acquisition of Legionella type IV secretion substrates via interdomain horizontal gene transfer. J Bacteriol. 187(22):7716-26. [PudMed:16267296]
(64) Zhao Y et al (2005). Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae. J Bacteriol. 187(6):2113-26. [PudMed:15743960]
(65) Middleton R et al (2005). Predicted hexameric structure of the Agrobacterium VirB4 C terminus suggests VirB4 acts as a docking site during type IV secretion. Proc Natl Acad Sci U S A. 102(5):1685-90. [PudMed:15668378]
(66) Mohd-Zain Z et al (2004). Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands. J Bacteriol. 186(23):8114-22. [PudMed:15547285]
(67) Blomstergren A et al (2004). Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates. Gene. 328:85-93. [PudMed:15019987]
(68) Brassinga AK et al (2003). A 65-kilobase pathogenicity island is unique to Philadelphia-1 strains of Legionella pneumophila. J Bacteriol. 185(15):4630-7. [PudMed:12867476]
(69) Planet PJ et al (2001). Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification. Proc Natl Acad Sci U S A. 98(5):2503-8. [PudMed:11226268]