SecReT4
This Tool Annotates and Locates T4SS components in The DNA Sequence

Input Your DNA Sequence
Example: example.fas

Example: Plasmid F [NC_002483]

Example: NC_002483


To Upload Your Sequence
You should:
Upload a Fasta File (Required)
Example: NC_002483.fas

Upload a Ptt File (Optional)
Example: NC_002483.ptt
You should:
Upload a GenBank File (Required)
Example: NC_002483.gbk





Upload Your File (FASTA/PPT/GenBank format) Here
Set Parameters

Select a coding sequence prediction tool for raw DNA sequence *: [linkout Prodigal] [linkout Glimmer3]
SecReT4 Blastp E-value <
SecReT4 Blastp Identity > (0~100) %
SecReT4 Maximum distance to co-localize two genes: (0~100000) bp **

* Coding sequence prediction will be skipped for annotated sequence.
** Identified T4SS genes within this distance will be clustered.

Please click "Run" after the required file has been uploaded.

Retrieve Results
Input your job ID