SecReT6
Protein ID: 145600383
SecReT6 ID204
T6SS typei3
Gene symbol-
Locus tagYPDSF_3128
StrainYersinia pestis Pestoides F
Repliconchromosome [GenBank: NC_009381] [Browse all T6SS(s) in this replicon]
Location [Strand]3558018..3560606 [-]
ProductClp ATPase
NoteTssH
UniProt IDA4TQC4
KEGG IDypp:YPDSF_3128
PDB IDNA
Domain hit(s) vs Pfam AAA_2 [PF07724], Evalue: 3.90E-33, Aligned region: 225..247
AAA_2 [PF07724], Evalue: 3.90E-33, Aligned region: 595..762
AAA [PF00004], Evalue: 3.40E-20, Aligned region: 226..359
AAA [PF00004], Evalue: 3.40E-20, Aligned region: 601..729
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 26..94
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 203..248
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 269..305
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 414..480
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 574..645
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 666..693
AAA_16 [PF13191], Evalue: 3.20E-12, Aligned region: 747..822
AAA_5 [PF07728], Evalue: 2.10E-10, Aligned region: 226..246
AAA_5 [PF07728], Evalue: 2.10E-10, Aligned region: 445..497
AAA_5 [PF07728], Evalue: 2.10E-10, Aligned region: 600..706
Clp_N [PF02861], Evalue: 2.70E-09, Aligned region: 22..73
Clp_N [PF02861], Evalue: 2.70E-09, Aligned region: 111..122
AAA_22 [PF13401], Evalue: 6.70E-08, Aligned region: 225..339
AAA_22 [PF13401], Evalue: 6.70E-08, Aligned region: 362..390
AAA_22 [PF13401], Evalue: 6.70E-08, Aligned region: 598..627
Sigma54_activat [PF00158], Evalue: 9.00E-08, Aligned region: 205..245
Sigma54_activat [PF00158], Evalue: 9.00E-08, Aligned region: 587..706
Zeta_toxin [PF06414], Evalue: 6.30E-07, Aligned region: 168..201
Zeta_toxin [PF06414], Evalue: 6.30E-07, Aligned region: 226..249
Zeta_toxin [PF06414], Evalue: 6.30E-07, Aligned region: 590..640
NACHT [PF05729], Evalue: 3.30E-06, Aligned region: 226..253
NACHT [PF05729], Evalue: 3.30E-06, Aligned region: 601..728
AAA_17 [PF13207], Evalue: 1.30E-05, Aligned region: 226..265
AAA_17 [PF13207], Evalue: 1.30E-05, Aligned region: 600..636
AAA_19 [PF13245], Evalue: 1.30E-05, Aligned region: 223..247
AAA_19 [PF13245], Evalue: 1.30E-05, Aligned region: 598..622
AAA_19 [PF13245], Evalue: 1.30E-05, Aligned region: 813..826
ClpB_D2-small [PF10431], Evalue: 4.70E-05, Aligned region: 455..476
ClpB_D2-small [PF10431], Evalue: 4.70E-05, Aligned region: 767..841
ResIII [PF04851], Evalue: 7.20E-05, Aligned region: 184..248
ResIII [PF04851], Evalue: 7.20E-05, Aligned region: 293..308
ResIII [PF04851], Evalue: 7.20E-05, Aligned region: 572..621
T2SE [PF00437], Evalue: 8.40E-05, Aligned region: 212..248
T2SE [PF00437], Evalue: 8.40E-05, Aligned region: 375..404
T2SE [PF00437], Evalue: 8.40E-05, Aligned region: 597..630
Arch_ATPase [PF01637], Evalue: 9.80E-05, Aligned region: 205..246
Arch_ATPase [PF01637], Evalue: 9.80E-05, Aligned region: 278..375
Arch_ATPase [PF01637], Evalue: 9.80E-05, Aligned region: 598..628
AAA_18 [PF13238], Evalue: 0.00013, Aligned region: 226..250
AAA_18 [PF13238], Evalue: 0.00013, Aligned region: 601..626
Torsin [PF06309], Evalue: 0.00073, Aligned region: 470..496
Torsin [PF06309], Evalue: 0.00073, Aligned region: 558..623
DUF87 [PF01935], Evalue: 0.002, Aligned region: 228..248
DUF87 [PF01935], Evalue: 0.002, Aligned region: 437..471
DUF87 [PF01935], Evalue: 0.002, Aligned region: 602..629
AAA_25 [PF13481], Evalue: 0.0025, Aligned region: 209..250
AAA_25 [PF13481], Evalue: 0.0025, Aligned region: 356..388
AAA_25 [PF13481], Evalue: 0.0025, Aligned region: 599..613
AAA_29 [PF13555], Evalue: 0.0027, Aligned region: 218..244
AAA_29 [PF13555], Evalue: 0.0027, Aligned region: 598..632
IstB_IS21 [PF01695], Evalue: 0.0027, Aligned region: 215..249
IstB_IS21 [PF01695], Evalue: 0.0027, Aligned region: 600..617
RNA_helicase [PF00910], Evalue: 0.0034, Aligned region: 227..247
RNA_helicase [PF00910], Evalue: 0.0034, Aligned region: 601..622
DUF815 [PF05673], Evalue: 0.0039, Aligned region: 220..301
DUF815 [PF05673], Evalue: 0.0039, Aligned region: 600..637
DEAD [PF00270], Evalue: 0.0055, Aligned region: 212..381
DEAD [PF00270], Evalue: 0.0055, Aligned region: 598..623
FtsK_SpoIIIE [PF01580], Evalue: 0.0083, Aligned region: 224..252
FtsK_SpoIIIE [PF01580], Evalue: 0.0083, Aligned region: 599..621
DUF2075 [PF09848], Evalue: 0.0085, Aligned region: 228..328
DUF2075 [PF09848], Evalue: 0.0085, Aligned region: 599..621
DUF258 [PF03193], Evalue: 0.0092, Aligned region: 220..246
DUF258 [PF03193], Evalue: 0.0092, Aligned region: 599..620
Protein Sequence: 862 a.a.     [Download]
>gi|145600383|ref|YP_001164459.1| Clp ATPase [Yersinia pestis Pestoides F]
MYQRERLFNRLGTFAYKTFVEATRLCRSYRHEYVELEHWLKILMDQQRGDIPALLTHYGLSQTVISTQLD
RIIQHMPVTKASVQDLSSRLESVVEGGLVLSQLMASPSPIRTSHILLALLQDTQHQRWLYRLCDEFKKLP
VPQVAEEYEGLLVNSIEQTSEVQRGDALVTETDSSSSKEAHAALNKWCNDLTQQARDGEIDPVIGREAEL
RQVIDILLRRRQNNPILVGEAGVGKTAVVEALARKLASGDVPPLLQGARLLSLDLGRMQAGASMRGEFES
RLKSLIDGISQSDTPVILFCDEAHTLVGAGGQAGTGDAVNLLKPMLARGALRMIAATTWSEYKQFIEPDA
ALTRRFQRVLIGEPNESTAVDMLRAIAPHFAQHHNVTIRDGAIHAAVRLSLRNLPSRQLPDKAISLLDTA
CARVALSQYAQPQAIEQLSAQLDVLKTEHQYLVREKQLGEAVDQRLDDVQTQIQAFEHELTALQSRHLHE
QQLVREVLPEGEGSGMMTENARWGELMALQEASPLVYPWVDEQSIAAVLSDWTGIPSGKMLQDDIECVLN
LEQRLGDHIFGQRNAIKEISQAIRIARAGIQSQERPLGIFLLAGSTGTGKTETANVLVETLYGGAHNLIT
FNMSEFQEAHTLSTLKGAPPGYVGYGKGGKLTEAVRRKPYSVILLDEFDKAHADIQDAFYQVFDKGWMED
AEGRRVSFRQCFILLTCNQGAEEIEQAYLTANDIKPGALKPLVYDALLRRFAPALLARVNIIPYIPLDQD
ALAQIASHHLARLQTRLWDEIGATLVTEGDIPGWIASRVCSHPNHGRAVEELLRQTLLPAVGNEVLKRRH
EAEPLREIRLIVEETELSIEFA
 
Nucleotide Sequence: 2589 bp     [Download]
>ref|NC_009381.1|:c3560606-3558018 Clp ATPase [Yersinia pestis Pestoides F]
GTGTATCAACGCGAACGTCTTTTTAATCGATTGGGCACTTTTGCCTATAAAACTTTTGTTGAAGCCACCC
GTCTTTGCCGCAGTTATCGGCATGAGTATGTGGAGCTTGAACATTGGTTAAAAATTCTCATGGATCAACA
GCGTGGGGATATTCCTGCTCTACTGACGCATTACGGACTGAGCCAGACGGTTATCTCCACGCAATTGGAT
CGCATTATTCAGCATATGCCCGTCACCAAAGCATCGGTGCAGGATTTATCATCACGCTTGGAGTCCGTGG
TCGAAGGCGGATTGGTGTTGAGCCAATTGATGGCGTCACCTTCTCCTATCCGTACCTCGCATATTTTACT
GGCACTATTACAGGATACCCAGCATCAGCGCTGGTTATACCGCCTGTGCGATGAATTCAAAAAGCTGCCG
GTCCCACAGGTTGCAGAGGAATATGAAGGCCTATTAGTTAACTCCATTGAACAGACCAGCGAGGTTCAAA
GAGGCGACGCATTAGTGACGGAAACGGACAGCAGCTCATCAAAAGAAGCGCATGCGGCATTGAACAAATG
GTGTAACGACCTTACCCAGCAAGCCCGTGACGGTGAGATTGACCCCGTTATTGGTCGTGAAGCAGAACTG
CGTCAAGTGATTGATATTTTACTCCGTCGCCGTCAGAACAACCCTATTTTGGTTGGGGAAGCGGGGGTCG
GTAAAACGGCGGTGGTTGAAGCGCTAGCGCGAAAACTGGCCAGTGGCGATGTCCCTCCGCTGTTGCAAGG
GGCGCGTCTGCTTTCTCTGGATTTGGGGAGGATGCAAGCCGGTGCCAGTATGCGCGGTGAATTTGAATCA
CGTCTTAAATCCCTGATCGATGGCATCAGCCAATCGGATACCCCGGTTATTCTGTTTTGTGATGAAGCCC
ATACGTTGGTGGGGGCAGGCGGGCAGGCGGGCACGGGGGATGCGGTCAACCTGCTTAAACCGATGTTGGC
GAGGGGCGCATTGCGCATGATCGCCGCCACCACCTGGTCAGAGTATAAACAGTTTATTGAACCTGACGCC
GCGCTGACCCGGCGTTTCCAGCGGGTATTGATTGGCGAGCCAAACGAATCTACCGCCGTCGATATGCTAC
GGGCGATTGCGCCACATTTTGCTCAACATCATAACGTCACTATCCGCGACGGTGCCATTCACGCGGCGGT
GCGCCTGTCATTACGCAACCTGCCTTCCCGGCAGTTGCCCGATAAAGCCATCAGTCTGCTCGACACCGCT
TGCGCGCGGGTCGCGCTCAGCCAATATGCCCAACCACAGGCGATTGAACAGTTATCGGCCCAACTGGATG
TGCTCAAAACCGAGCATCAATATCTGGTACGGGAGAAGCAACTGGGCGAAGCGGTTGATCAACGGCTAGA
TGACGTTCAGACACAGATCCAGGCGTTTGAACATGAACTAACCGCCTTGCAAAGCCGCCATCTGCATGAG
CAACAGCTAGTGAGGGAGGTCCTGCCGGAGGGAGAAGGCAGTGGCATGATGACGGAAAATGCCCGCTGGG
GTGAACTGATGGCGTTACAGGAAGCGTCGCCACTGGTCTATCCATGGGTTGATGAGCAGAGCATCGCCGC
GGTGCTTTCCGATTGGACCGGGATCCCGTCCGGCAAAATGTTGCAGGACGATATTGAATGCGTCCTGAAT
CTTGAACAGCGTCTCGGTGATCATATTTTCGGGCAACGCAACGCTATCAAAGAGATTTCGCAGGCGATAC
GTATTGCTCGGGCGGGCATCCAGTCTCAGGAGCGGCCACTCGGGATCTTCCTGCTGGCGGGGTCAACCGG
TACGGGCAAAACAGAAACGGCCAATGTACTGGTCGAAACCTTGTATGGCGGTGCTCATAACCTTATTACC
TTCAATATGAGTGAGTTCCAAGAGGCGCATACCTTATCCACGCTGAAAGGCGCACCTCCGGGCTATGTCG
GCTATGGCAAGGGGGGGAAATTAACCGAAGCGGTAAGACGCAAACCTTATTCGGTCATCCTGCTTGATGA
GTTTGATAAAGCTCACGCCGATATTCAGGACGCCTTTTATCAGGTCTTCGACAAAGGGTGGATGGAAGAT
GCCGAAGGGCGTCGGGTCAGTTTCCGCCAGTGTTTCATCTTACTGACCTGTAATCAGGGCGCGGAAGAGA
TCGAACAGGCTTACCTCACCGCCAACGATATCAAACCCGGTGCATTAAAACCGTTGGTATACGACGCCCT
GTTGCGCCGCTTTGCGCCAGCGCTGTTAGCCAGGGTCAATATCATTCCTTATATCCCATTAGATCAGGAC
GCTCTGGCACAGATCGCCTCTCATCATCTTGCGCGCTTACAAACGCGCCTGTGGGATGAAATTGGTGCCA
CTTTGGTGACCGAGGGGGATATCCCCGGCTGGATCGCCTCACGGGTTTGCAGCCATCCGAACCATGGTCG
TGCGGTGGAAGAACTCTTGCGTCAAACCTTACTTCCCGCTGTTGGCAATGAAGTGTTGAAGCGTCGCCAT
GAGGCTGAACCGCTGAGAGAGATACGCCTGATTGTTGAGGAGACAGAACTGAGTATTGAGTTCGCGTAG
 Primer design